ggKbase home page

SCNpilot_cont_1000_p_scaffold_2852

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2852_1
unknown

Not on your lists

comp(2..100)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2852_2
Elizabethkingia sp. BM10, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

438..1073
DNA (636bp) protein (212aa)
Ketosteroid isomerase-like protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2PX26_9DELT
SnoaL-like domain protein {ECO:0000313|EMBL:AJW62919.1}; TaxID=722877 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia sp. BM10.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2852_3
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(1968..3710)
DNA (1743bp) protein (581aa)
aspS; aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] rbh
Aspartate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00044}; EC=6.1.1.12 {ECO:0000255|HAMAP-Rule:MF_00044};; Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000255|HAMAP-Rule:MF_00044};; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
Aspartate--tRNA ligase n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=SYD_AMOA5 rbh
SCNpilot_cont_1000_p_scaffold_2852_4
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4071..4310
DNA (240bp) protein (80aa)
Uncharacterized protein {ECO:0000313|EMBL:GAL87498.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
Putative uncharacterized protein id=2228119 bin=GWB2_Ignavibacteria_35_12 species=Gillisia limnaea genus=Gillisia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
SCNpilot_cont_1000_p_scaffold_2852_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4673..6190)
DNA (1518bp) protein (506aa)
Alanine racemase {ECO:0000313|EMBL:ACT96188.1}; EC=5.1.1.1 {ECO:0000313|EMBL:ACT96188.1};; EC=6.3.2.10 {ECO:0000313|EMBL:ACT96188.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
alanine racemase n=1 Tax=Dyadobacter beijingensis RepID=UPI00036A4084
putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase
SCNpilot_cont_1000_p_scaffold_2852_6
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6262..6555)
DNA (294bp) protein (98aa)
Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JWW5_9BACT
Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage {ECO:0000313|EMBL:ELR72688.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
septum formation initiator
SCNpilot_cont_1000_p_scaffold_2852_7
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6736..8013)
DNA (1278bp) protein (426aa)
enolase; K01689 enolase [EC:4.2.1.11] rbh
Enolase {ECO:0000255|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000255|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000255|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000255|HAMAP-Rule:MF_00318}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
Enolase n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=ENO_AMOA5 rbh
SCNpilot_cont_1000_p_scaffold_2852_8
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8343..8537)
DNA (195bp) protein (65aa)
Uncharacterized protein n=2 Tax=Geobacillus RepID=S7SSC5_9BACI
putative transposase
Transposase {ECO:0000313|EMBL:KFX34356.1}; TaxID=1422 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus stearothermophilus (Bacillus stearothermophilus).;"
SCNpilot_cont_1000_p_scaffold_2852_9
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8534..9496)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3ESQ9_AMOA5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACE06261.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_2852_10
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9626..10744)
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] rbh
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
DNA polymerase III subunit beta n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EUH9_AMOA5 rbh
SCNpilot_cont_1000_p_scaffold_2852_11
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11154..12860
DNA (1707bp) protein (569aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EU30_AMOA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE06732.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_2852_12
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13016..15529
DNA (2514bp) protein (838aa)
Cyclin domain protein F-box protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EUE1_AMOA5
cyclin domain-containing protein
Cyclin domain protein F-box protein {ECO:0000313|EMBL:ACE05560.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_2852_13
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15877..17427)
DNA (1551bp) protein (517aa)
Rne/Rng family ribonuclease; K08301 ribonuclease G [EC:3.1.26.-] rbh
Ribonuclease, Rne/Rng family n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EUI0_AMOA5 rbh
Ribonuclease, Rne/Rng family {ECO:0000313|EMBL:ACE05599.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_2852_14
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(17851..18153)
DNA (303bp) protein (101aa)
Histone family protein DNA-binding protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EUI1_AMOA5
histone family DNA-binding protein; K03530 DNA-binding protein HU-beta
Histone family protein DNA-binding protein {ECO:0000313|EMBL:ACE05600.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_2852_15
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

18299..19420
DNA (1122bp) protein (374aa)
A/G-specific adenine glycosylase; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-] rbh
A/G-specific adenine glycosylase n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EUI2_AMOA5 rbh
A/G-specific adenine glycosylase {ECO:0000313|EMBL:ACE05601.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_2852_16
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19460..19870
DNA (411bp) protein (137aa)
Single-stranded DNA-binding protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EUI3_AMOA5
single-strand binding protein; K03111 single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_2852_17
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20279..21733)
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3ESR0_AMOA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE06262.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_2852_18
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21910..24231)
DNA (2322bp) protein (774aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3ETQ2_AMOA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE06604.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
Displaying 18 items

View Taxonomy