ggKbase home page

SCNpilot_cont_1000_p_scaffold_1765

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1765_1
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

164..1570
DNA (1407bp) protein (469aa)
TrmA family RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] rbh
RNA methyltransferase, TrmA family n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EU44_AMOA5 rbh
RNA methyltransferase, TrmA family {ECO:0000313|EMBL:ACE05463.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_1765_2
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1768..2151
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EU45_AMOA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE05464.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_1765_3
unknown

Not on your lists

comp(2226..6098)
DNA (3873bp) protein (1291aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1765_4
unknown

Not on your lists

comp(6503..9538)
DNA (3036bp) protein (1012aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1765_5
RBG_16_Gammaproteobacteria_37_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9914..10201
DNA (288bp) protein (96aa)
Endonuclease id=2201931 bin=GWB2_CP_45_9 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
excinuclease ABC subunit C; K07461 putative endonuclease
Tax=RBG_16_Gammaproteobacteria_37_9_curated
SCNpilot_cont_1000_p_scaffold_1765_6
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10702..14610)
DNA (3909bp) protein (1303aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EU46_AMOA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE05465.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_1765_7
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14862..15803)
DNA (942bp) protein (314aa)
Helix-turn-helix-domain containing protein AraC type n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EU47_AMOA5 rbh
helix-turn-helix-domain containing protein rbh
Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ACE05466.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_1765_8
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15784..16503)
DNA (720bp) protein (240aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] rbh
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EU48_AMOA5 rbh
SCNpilot_cont_1000_p_scaffold_1765_9
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16805..18298
DNA (1494bp) protein (498aa)
Permease YjgP/YjgQ family protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EU49_AMOA5 rbh
permease YjgP/YjgQ family protein rbh
Permease YjgP/YjgQ family protein {ECO:0000313|EMBL:ACE05468.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_1765_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18574..18861)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI00030FDECD
excinuclease ABC subunit C
Excinuclease ABC C subunit domain protein {ECO:0000313|EMBL:ABS64485.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Displaying 10 items

View Taxonomy