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SCNpilot_cont_1000_p_scaffold_2318

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Displaying 18 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2318_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..600
DNA (600bp) protein (200aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJU5_9PROT
SCNpilot_cont_1000_p_scaffold_2318_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

609..1715
DNA (1107bp) protein (369aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] rbh
Queuine tRNA-ribosyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=TGT_NITMU rbh
SCNpilot_cont_1000_p_scaffold_2318_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1750..2085
DNA (336bp) protein (112aa)
Preprotein translocase subunit YajC (TC 3.A.5.1.1) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLY2_9PROT
Preprotein translocase subunit YajC {ECO:0000313|EMBL:KIO49312.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
SCNpilot_cont_1000_p_scaffold_2318_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2161..4005
DNA (1845bp) protein (615aa)
Protein translocase subunit SecD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL92_9PROT rbh
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD rbh
SCNpilot_cont_1000_p_scaffold_2318_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4121..5053
DNA (933bp) protein (311aa)
Protein-export membrane protein SecF n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJU1_9PROT rbh
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF rbh
SCNpilot_cont_1000_p_scaffold_2318_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5158..5838
DNA (681bp) protein (227aa)
DedA protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWT1_9PROT rbh
DedA protein {ECO:0000313|EMBL:CCU63700.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K03975 membrane-associated protein rbh
SCNpilot_cont_1000_p_scaffold_2318_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5999..7099)
DNA (1101bp) protein (367aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hemH; ferrochelatase (EC:4.99.1.1); K01772 ferrochelatase [EC:4.99.1.1] rbh
Ferrochelatase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL63_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2318_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7295..8314)
DNA (1020bp) protein (340aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLX8_9PROT rbh
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor rbh
SCNpilot_cont_1000_p_scaffold_2318_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8617..9504
DNA (888bp) protein (296aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ppnK; NAD(+)/NADH kinase family protein (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23] rbh
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJT5_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2318_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9471..11174
DNA (1704bp) protein (568aa)
DNA repair protein RecN n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWS4_9PROT rbh
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N) rbh
SCNpilot_cont_1000_p_scaffold_2318_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11234..11803)
DNA (570bp) protein (190aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
GTP cyclohydrolase I (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16] rbh
GTP cyclohydrolase 1 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLX4_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2318_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12065..12886
DNA (822bp) protein (274aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:CCU63691.1}; EC=3.1.11.2 {ECO:0000313|EMBL:CCU63691.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
exodeoxyribonuclease III (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
Exodeoxyribonuclease III n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJS9_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2318_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12951..13685)
DNA (735bp) protein (245aa)
Transcriptional regulator, LuxR family n=2 Tax=Nitrosospira multiformis RepID=Q2Y6B5_NITMU rbh
LuxR family transcriptional regulator {ECO:0000313|EMBL:KIO49301.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
LuxR family transcriptional regulator; K07782 LuxR family transcriptional regulator rbh
SCNpilot_cont_1000_p_scaffold_2318_14
unknown

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13853..13963
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2318_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14103..15143)
DNA (1041bp) protein (347aa)
Regulatory protein, RpfE type n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLX1_9PROT rbh
Regulatory protein, RpfE type {ECO:0000313|EMBL:CCU63688.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_2318_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15289..16668)
DNA (1380bp) protein (460aa)
TldE/PmbA protein, part of proposed TldE/TldD proteolytic complex n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL81_9PROT rbh
TldE/PmbA protein, part of proposed TldE/TldD proteolytic complex {ECO:0000313|EMBL:CCU63687.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
peptidase U62, modulator of DNA gyrase; K03592 PmbA protein rbh
SCNpilot_cont_1000_p_scaffold_2318_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16784..17185
DNA (402bp) protein (134aa)
UPF0307 protein NE2194 n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Y2194_NITEU
Uncharacterized protein {ECO:0000313|EMBL:KIO49298.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K09889 ribosome-associated protein
SCNpilot_cont_1000_p_scaffold_2318_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17212..17964)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLW7_9PROT rbh
Transglutaminase {ECO:0000313|EMBL:KIO49297.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
transglutaminase-like protein rbh
Displaying 18 items

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