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SCNpilot_cont_1000_p_scaffold_2362

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2362_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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172..1344
DNA (1173bp) protein (391aa)
nitrite reductase (EC:1.7.2.1); K00368 nitrite reductase (NO-forming) [EC:1.7.2.1] rbh
Copper-containing nitrite reductase n=3 Tax=Bacteria RepID=M5DHJ4_9PROT rbh
Nitrite reductase {ECO:0000313|EMBL:KIO48053.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_2362_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1619..2092
DNA (474bp) protein (158aa)
Lipoprotein, putative n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQ17_9PROT
Water stress/hypersensitive response domain-containing protein {ECO:0000313|EMBL:KIO48050.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2362_3
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2297..2938)
DNA (642bp) protein (214aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] rbh
Orotate phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_01208}; Short=OPRT {ECO:0000255|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000255|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000255|HAMAP-Rule:MF_01208};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Orotate phosphoribosyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=PYRE_NITMU rbh
SCNpilot_cont_1000_p_scaffold_2362_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3056..3811
DNA (756bp) protein (252aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:CCU61543.1}; EC=3.1.11.2 {ECO:0000313|EMBL:CCU61543.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
exodeoxyribonuclease III (EC:4.2.99.18); K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
Exodeoxyribonuclease III n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGX4_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2362_5
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3815..5203
DNA (1389bp) protein (463aa)
Major facilitator superfamily MFS_1 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCJ0_NITMU rbh
major facilitator transporter; K08218 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABB73531.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_2362_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5206..5733)
DNA (528bp) protein (176aa)
Methionine biosynthesis protein MetW n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF74_9PROT rbh
Methionine biosynthesis protein MetW {ECO:0000313|EMBL:KIO48046.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
methionine biosynthesis MetW rbh
SCNpilot_cont_1000_p_scaffold_2362_7
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5967..8735
DNA (2769bp) protein (923aa)
Putative CRISPR-associated helicase Cas3 n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RE57_9RHOO rbh
CRISPR-associated helicase Cas3 {ECO:0000313|EMBL:CDG83803.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
CRISPR-associated helicase Cas3; K07012 rbh
SCNpilot_cont_1000_p_scaffold_2362_8
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8858..10675
DNA (1818bp) protein (606aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZNV9_9BACT rbh
CRISPR-associated Cse1 family protein {ECO:0000313|EMBL:CDG83802.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_2362_9

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10686..11198
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QU39_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10761.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
CRISPR-associated protein, Cse2 family
SCNpilot_cont_1000_p_scaffold_2362_10

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11243..12313
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QU40_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBI10762.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
CRISPR-associated protein, Cse4 family rbh
SCNpilot_cont_1000_p_scaffold_2362_11

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12319..13098
DNA (780bp) protein (260aa)
CRISPR-associated protein Cas5 family n=1 Tax=mine drainage metagenome RepID=E6QU41_9ZZZZ rbh
CRISPR-associated protein Cas5 family {ECO:0000313|EMBL:CBI10763.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
crispr-associated protein, cas5e-type
SCNpilot_cont_1000_p_scaffold_2362_12

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13088..13810
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QU42_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBI10764.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
CRISPR-associated Cse3 family protein
SCNpilot_cont_1000_p_scaffold_2362_13

Not on your lists

13935..15026
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QU45_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBI10767.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
cas1; CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1 rbh
SCNpilot_cont_1000_p_scaffold_2362_14
unknown

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16194..16370
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2362_15
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16772..17653)
DNA (882bp) protein (294aa)
metX; homoserine O-acetyltransferase (EC:2.3.1.31); K00641 homoserine O-acetyltransferase [EC:2.3.1.31]
Homoserine O-acetyltransferase {ECO:0000255|HAMAP-Rule:MF_00296}; EC=2.3.1.31 {ECO:0000255|HAMAP-Rule:MF_00296};; Homoserine O-trans-acetylase {ECO:0000255|HAMAP-Rule:MF_00296}; Short=HTA {ECO:0000255|HAMAP-Rule:MF_00296};; Short=Homoserine transacetylase {ECO:0000255|HAMAP-Rule:MF_00296};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Homoserine O-acetyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=METX_NITMU
SCNpilot_cont_1000_p_scaffold_2362_16
unknown

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comp(17807..17920)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2362_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17917..19653)
DNA (1737bp) protein (579aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
phosphoenolpyruvate-protein phosphotransferase; K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9] rbh
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF73_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2362_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19650..19919)
DNA (270bp) protein (90aa)
HPrNtr n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCJ4_NITMU
Phosphocarrier protein HPr {ECO:0000313|EMBL:KIO48036.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
HPrNtr; K11189 phosphocarrier protein
SCNpilot_cont_1000_p_scaffold_2362_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19900..20304)
DNA (405bp) protein (135aa)
PTS system fructose subfamily IIA component; K02821 PTS system, ascorbate-specific IIA component [EC:2.7.1.69]
PTS system fructose subfamily IIA component n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGC1_9PROT
PTS system fructose subfamily IIA component {ECO:0000313|EMBL:CCU61534.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_p_scaffold_2362_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20541..22157)
DNA (1617bp) protein (539aa)
General secretion pathway protein, ATPase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF72_9PROT rbh
General secretion pathway protein, ATPase {ECO:0000313|EMBL:CCU61531.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ATPase rbh
SCNpilot_cont_1000_p_scaffold_2362_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22826..23842
DNA (1017bp) protein (339aa)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
gcvT; glycine cleavage system aminomethyltransferase T (EC:2.1.2.10); K00605 aminomethyltransferase [EC:2.1.2.10] rbh
Aminomethyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGB7_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2362_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23884..24270
DNA (387bp) protein (129aa)
Glycine cleavage system H protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGW4_9PROT
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272, ECO:0000313|EMBL:KIO48033.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
glycine cleavage system protein H; K02437 glycine cleavage system H protein
SCNpilot_cont_1000_p_scaffold_2362_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24350..25711
DNA (1362bp) protein (454aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796};; Glycine cleavage system P-protein subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria;
glycine dehydrogenase subunit 1 (EC:1.4.4.2); K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] rbh
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF71_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2362_24
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25774..26274
DNA (501bp) protein (167aa)
Probable thiol peroxidase {ECO:0000256|HAMAP-Rule:MF_00269}; EC=1.11.1.- {ECO:0000256|HAMAP-Rule:MF_00269};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; K11065 thiol peroxidase, atypical 2-Cys peroxiredoxin [EC:1.11.1.15]
Probable thiol peroxidase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPZ3_9PROT
SCNpilot_cont_1000_p_scaffold_2362_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26455..27903
DNA (1449bp) protein (483aa)
Probable glycine dehydrogenase (decarboxylating) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00713};; Glycine cleavage system P-protein subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine decarboxylase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine dehydrogenase (aminomethyl-transferring) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="N
glycine dehydrogenase subunit 2 (EC:1.4.4.2); K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] rbh
Probable glycine dehydrogenase (decarboxylating) subunit 2 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGB1_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2362_26
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27967..28905
DNA (939bp) protein (313aa)
PfkB; K00856 adenosine kinase [EC:2.7.1.20] rbh
PfkB n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCK4_NITMU rbh
Sugar kinase {ECO:0000313|EMBL:KIO48029.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_2362_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29256..29834
DNA (579bp) protein (193aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF70_9PROT
Glycerol acyltransferase {ECO:0000313|EMBL:KIO48027.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_2362_28
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29761..30588)
DNA (828bp) protein (276aa)
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical {ECO:0000256|HAMAP-Rule:MF_00199, ECO:0000256|SAAS:SAAS00088338}; EC=3.6.1.41 {ECO:0000256|HAMAP-Rule:MF_00199, ECO:0000256|SAAS:SAAS00088330};; Ap4A hydrolase {ECO:0000256|HAMAP-Rule:MF_00199}; Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00199}; Diadenosine tetraphosphatase {ECO:0000256|HAMAP-Rule:MF_00199}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitr
apaH; diadenosine tetraphosphatase (EC:3.6.1.41); K01525 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] rbh
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=APAH_NITMU rbh
SCNpilot_cont_1000_p_scaffold_2362_29
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30782..31333)
DNA (552bp) protein (184aa)
Probable cytochrome c5 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGA7_9PROT
Probable cytochrome c5 {ECO:0000313|EMBL:CCU61519.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
cytochrome c, class I
Displaying 29 items

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