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SCNpilot_cont_1000_p_scaffold_2429

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2429_1
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

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1..306
DNA (306bp) protein (102aa)
thyA; thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAD6_9PROT
Tax=RBG_16_Betaproteobacteria_56_24_curated
SCNpilot_cont_1000_p_scaffold_2429_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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303..821
DNA (519bp) protein (173aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSC4_9PROT
SCNpilot_cont_1000_p_scaffold_2429_3
unknown

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comp(897..1082)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2429_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1183..2358)
DNA (1176bp) protein (392aa)
Orn/DAP/Arg decarboxylase 2; K01581 ornithine decarboxylase [EC:4.1.1.17] rbh
Ornithine decarboxylase / Arginine decarboxylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGC6_9PROT rbh
Decarboxylase {ECO:0000313|EMBL:KIO49002.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_2429_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2723..3256)
DNA (534bp) protein (178aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146, ECO:0000313|EMBL:KIO49068.1}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146, ECO:0000256|SAAS:SAAS00054754};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] rbh
Deoxycytidine triphosphate deaminase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIL9_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2429_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3319..4407)
DNA (1089bp) protein (363aa)
Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI67_9PROT rbh
ATP-binding protein {ECO:0000313|EMBL:KIO49001.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning rbh
SCNpilot_cont_1000_p_scaffold_2429_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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4769..6976
DNA (2208bp) protein (736aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] rbh
Methionine--tRNA ligase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=SYM_NITMU rbh
SCNpilot_cont_1000_p_scaffold_2429_8
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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7271..10057
DNA (2787bp) protein (929aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21XF0_RHOFD rbh
response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_cont_1000_p_scaffold_2429_9
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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10420..11130
DNA (711bp) protein (237aa)
Putative glutathione S-transferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAH2_NITMU rbh
putative glutathione S-transferase rbh
Putative glutathione S-transferase {ECO:0000313|EMBL:ABB74249.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_2429_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11134..12096
DNA (963bp) protein (321aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
glutathione synthetase (EC:6.3.2.3); K01920 glutathione synthase [EC:6.3.2.3] rbh
Glutathione synthetase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGW7_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2429_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12101..13030
DNA (930bp) protein (310aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG5_9PROT rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIO48768.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein rbh
SCNpilot_cont_1000_p_scaffold_2429_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13027..13782
DNA (756bp) protein (252aa)
ABC-2 protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5E1_NITMU rbh
hypothetical protein; K09686 antibiotic transport system permease protein rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_2429_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13833..14222)
DNA (390bp) protein (130aa)
Transcriptional regulator, HxlR family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTZ2_9PROT
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:CCU62830.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
HxlR family transcriptional regulator
Displaying 13 items

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