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SCNpilot_cont_1000_p_scaffold_2639

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2639_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(114..452)
DNA (339bp) protein (113aa)
Cytochrome c-type biogenesis protein CcmG/DsbE,thiol:disulfide oxidoreductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQZ3_9PROT
Thioredoxin {ECO:0000313|EMBL:KIO48812.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
thioredoxin
SCNpilot_cont_1000_p_scaffold_2639_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(683..2665)
DNA (1983bp) protein (661aa)
Thiol:disulfide interchange protein DsbD {ECO:0000256|HAMAP-Rule:MF_00399}; EC=1.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00399};; Protein-disulfide reductase {ECO:0000256|HAMAP-Rule:MF_00399}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
protein-disulfide reductase (EC:1.8.1.8); K04084 thiol:disulfide interchange protein DsbD [EC:1.8.1.8] rbh
Thiol:disulfide interchange protein DsbD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFE5_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2639_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2676..3092)
DNA (417bp) protein (139aa)
CutA1 divalent ion tolerance protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5K0_NITMU
Cation tolerance protein CutA {ECO:0000313|EMBL:KIO48811.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
CutA1 divalent ion tolerance protein; K03926 periplasmic divalent cation tolerance protein
SCNpilot_cont_1000_p_scaffold_2639_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3062..4009)
DNA (948bp) protein (316aa)
Nucleoside-diphosphate-sugar epimerases n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHL6_9PROT rbh
Nucleoside-diphosphate-sugar epimerases {ECO:0000313|EMBL:CCU61853.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
NAD-dependent epimerase/dehydratase rbh
SCNpilot_cont_1000_p_scaffold_2639_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4043..5128
DNA (1086bp) protein (362aa)
CDP-6-deoxy-delta-3,4-glucoseen reductase; K00523 CDP-4-dehydro-6-deoxyglucose reductase [EC:1.17.1.1] rbh
Oxidoreductase FAD/NAD(P)-binding protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5J8_NITMU rbh
CDP-6-deoxy-delta-3,4-glucoseen reductase {ECO:0000313|EMBL:KIO48809.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_2639_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5180..6400)
DNA (1221bp) protein (407aa)
Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (Unrelated to HemY-type PPO in GramPositives) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQZ7_9PROT rbh
Heme biosynthesis protein HemY {ECO:0000313|EMBL:KIO48803.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
HemY-like; K02498 HemY protein rbh
SCNpilot_cont_1000_p_scaffold_2639_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6402..7469)
DNA (1068bp) protein (356aa)
hypothetical protein; K02496 uroporphyrin-III C-methyltransferase [EC:2.1.1.107] rbh
Uroporphyrinogen-III synthase / Homolog of E. coli HemX protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFE7_9PROT rbh
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:KIO48802.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_2639_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7444..8265)
DNA (822bp) protein (274aa)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:CCU61857.1}; EC=4.2.1.75 {ECO:0000313|EMBL:CCU61857.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
uroporphyrinogen-III synthase (EC:4.2.1.75); K01719 uroporphyrinogen-III synthase [EC:4.2.1.75] rbh
Uroporphyrinogen-III synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHB2_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2639_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8262..9233)
DNA (972bp) protein (324aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260, ECO:0000313|EMBL:KIO48800.1}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260, ECO:0000256|SAAS:SAAS00018413};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61] rbh
Porphobilinogen deaminase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHM0_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2639_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9350..12181
DNA (2832bp) protein (944aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769}; Short=PEPC {ECO:0000256|HAMAP-Rule:MF_00595};; Short=PEPCase {ECO:0000256|HAMAP-Rule:MF_00595};; EC=4.1.1.31 {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
phosphoenolpyruvate carboxylase (EC:4.1.1.31); K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31] rbh
Phosphoenolpyruvate carboxylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH56_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2639_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12245..13624
DNA (1380bp) protein (460aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR02_9PROT rbh
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA rbh
SCNpilot_cont_1000_p_scaffold_2639_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13853..14104
DNA (252bp) protein (84aa)
PhoH-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5I8_NITMU
PhoH-like protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
PhoH-like protein {ECO:0000313|EMBL:ABB75983.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Displaying 12 items

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