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SCNpilot_cont_1000_p_scaffold_2760

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2760_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108..908)
DNA (801bp) protein (267aa)
Malto-oligosyltrehalose synthase {ECO:0000313|EMBL:CCU62080.1}; EC=5.4.99.15 {ECO:0000313|EMBL:CCU62080.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase (EC:5.4.99.15 2.4.1.25); K00705 4-alpha-glucanotransferase [EC:2.4.1.25]; K06044 (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
Malto-oligosyltrehalose synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DRM4_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2760_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(905..5014)
DNA (4110bp) protein (1370aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:KIO47904.1}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase (EC:5.4.99.15 2.4.1.25); K00705 4-alpha-glucanotransferase [EC:2.4.1.25]; K06044 (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
Maltooligosyl trehalose synthase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y966_NITMU
SCNpilot_cont_1000_p_scaffold_2760_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5011..6921)
DNA (1911bp) protein (637aa)
Malto-oligosyltrehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Short=MTHase {ECO:0000256|PIRNR:PIRNR006337};; EC=3.2.1.141 {ECO:0000256|PIRNR:PIRNR006337};; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Maltooligosyl trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
alpha amylase catalytic subunit; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] rbh
Malto-oligosyltrehalose trehalohydrolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMN0_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2760_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6940..10203)
DNA (3264bp) protein (1088aa)
alpha amylase domain-containing protein; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16] rbh
Trehalose synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DM19_9PROT rbh
Alpha-amylase {ECO:0000313|EMBL:KIO47902.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_2760_5
unknown

Not on your lists

10618..10968
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2760_6
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11086..11535)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8X2_NITMU
Trancriptional regulator, MarR family protein {ECO:0000313|EMBL:AKH39514.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2760_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11815..12840
DNA (1026bp) protein (342aa)
Fatty acid desaturase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN3_9PROT rbh
Fatty acid desaturase {ECO:0000313|EMBL:KIO48266.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Fatty acid desaturase rbh
SCNpilot_cont_1000_p_scaffold_2760_8
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12935..13267)
DNA (333bp) protein (111aa)
Transposase Tn3 family protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZPK6_THASP
Transposase {ECO:0000313|EMBL:KJS38471.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
transposase Tn3 family protein
SCNpilot_cont_1000_p_scaffold_2760_9
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13465..13782
DNA (318bp) protein (106aa)
SMR n=6 Tax=Gammaproteobacteria RepID=F2WU97_KLEPN
SMR {ECO:0000313|EMBL:AJT60364.1}; Small multidrug resistance protein {ECO:0000313|EMBL:AFQ90251.1}; Smr-2 {ECO:0000313|EMBL:AGM20436.1}; TaxID=550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae.;"
multidrug transporter
SCNpilot_cont_1000_p_scaffold_2760_10
unknown

Not on your lists

14181..14483
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2760_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14427..15833)
DNA (1407bp) protein (469aa)
succinate-semialdehyde dehydrogenase (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
Succinate-semialdehyde dehydrogenase (NAD(P)(+)) n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZKQ6_9PROT rbh
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KIO48501.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_2760_12
unknown

Not on your lists

comp(15874..15972)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2760_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15973..16452)
DNA (480bp) protein (160aa)
4-oxalocrotonate tautomerase n=1 Tax=Methylomonas sp. MK1 RepID=UPI000380625D
4-oxalocrotonate tautomerase {ECO:0000313|EMBL:KIO48500.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2760_14
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16600..17505
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8Z6_NITMU rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABB74775.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_2760_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17634..17849
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G970_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ28338.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
SCNpilot_cont_1000_p_scaffold_2760_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17810..18133
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JLW7_9GAMM
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEM49279.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
SCNpilot_cont_1000_p_scaffold_2760_17
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18277..19053
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q470J4_CUPPJ
hypothetical protein; K06889
Uncharacterized protein {ECO:0000313|EMBL:AAZ61189.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_cont_1000_p_scaffold_2760_18
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19111..20148)
DNA (1038bp) protein (346aa)
Hydroxyneurosporene-O-methyltransferase {ECO:0000313|EMBL:ABI59312.1}; EC=2.1.1.- {ECO:0000313|EMBL:ABI59312.1};; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
Hydroxyneurosporene-O-methyltransferase n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AH70_NITEC rbh
O-methyltransferase family protein rbh
SCNpilot_cont_1000_p_scaffold_2760_19
unknown

Not on your lists

20688..21485
DNA (798bp) protein (266aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2760_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21734..22015
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ55_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62724.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2760_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22120..23022)
DNA (903bp) protein (301aa)
Esterase/lipase/thioesterase family active site protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8X4_NITMU rbh
Esterase {ECO:0000313|EMBL:KIO48225.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
esterase/lipase/thioesterase family protein rbh
SCNpilot_cont_1000_p_scaffold_2760_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23086..24174)
DNA (1089bp) protein (363aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000313|EMBL:CCU64026.1}; EC=2.1.1.14 {ECO:0000313|EMBL:CCU64026.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKM7_9PROT rbh
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_2760_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24728..26788)
DNA (2061bp) protein (687aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXP8_9PROT rbh
Histidine kinase {ECO:0000313|EMBL:KIO48224.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
PAS/PAC sensor hybrid histidine kinase rbh
SCNpilot_cont_1000_p_scaffold_2760_24
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26886..29384
DNA (2499bp) protein (833aa)
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ABB74793.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ABB74793.1};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8X8_NITMU rbh
PAS/PAC sensor hybrid histidine kinase rbh
SCNpilot_cont_1000_p_scaffold_2760_25
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29472..30710
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Bordetella bronchiseptica 1289 RepID=K4U1I9_BORBO rbh
hypothetical protein; K07223 putative iron-dependent peroxidase rbh
Uncharacterized protein {ECO:0000313|EMBL:CAE36711.1}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;"
SCNpilot_cont_1000_p_scaffold_2760_26
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30703..31503
DNA (801bp) protein (267aa)
Linocin-M18 {ECO:0000313|EMBL:KCV66620.1}; EC=3.4.-.- {ECO:0000313|EMBL:KCV66620.1};; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
Bacteriocin n=3 Tax=Bordetella bronchiseptica RepID=K0MSZ7_BORBM rbh
linM18; bacteriocin rbh
SCNpilot_cont_1000_p_scaffold_2760_27
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31570..31782
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00035EE8E8
Uncharacterized protein {ECO:0000313|EMBL:EIN00020.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
hypothetical protein
Displaying 27 items

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