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SCNpilot_cont_1000_p_scaffold_3577

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3577_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..1052)
DNA (1050bp) protein (350aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
guaA; GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI73_9PROT
SCNpilot_cont_1000_p_scaffold_3577_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1271..1813)
DNA (543bp) protein (181aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205]
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DII8_9PROT
SCNpilot_cont_1000_p_scaffold_3577_3
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2028..2489
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T0ZN95_9ZZZZ
Uncharacterised protein {ECO:0000313|EMBL:CRE09721.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_cont_1000_p_scaffold_3577_4
unknown

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2600..3079
DNA (480bp) protein (160aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3577_5
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2962..3399)
DNA (438bp) protein (146aa)
Cyclase/dehydrase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9R6_NITMU
cyclase/dehydrase
Cyclase/dehydrase {ECO:0000313|EMBL:ABB74505.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_3577_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3497..3940
DNA (444bp) protein (148aa)
SsrA-binding protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI79_9PROT
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000313|EMBL:KIO48866.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
smpB; SsrA-binding protein; K03664 SsrA-binding protein
SCNpilot_cont_1000_p_scaffold_3577_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4023..5033
DNA (1011bp) protein (337aa)
Heme A synthase {ECO:0000256|HAMAP-Rule:MF_01665, ECO:0000313|EMBL:KIO48865.1}; Short=HAS {ECO:0000256|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000256|HAMAP-Rule:MF_01665}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Heme A synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIJ2_9PROT rbh
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15 rbh
SCNpilot_cont_1000_p_scaffold_3577_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5289..6626)
DNA (1338bp) protein (446aa)
Cytochrome c heme lyase subunit CcmH n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGA2_9PROT rbh
Cytochrome C biogenesis protein {ECO:0000313|EMBL:KIO48861.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K02200 cytochrome c-type biogenesis protein CcmH rbh
SCNpilot_cont_1000_p_scaffold_3577_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6623..7120)
DNA (498bp) protein (166aa)
Cytochrome c heme lyase subunit CcmL n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI83_9PROT
Cytochrome c heme lyase subunit CcmL {ECO:0000313|EMBL:CCU62242.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
cytochrome C biogenesis protein; K02200 cytochrome c-type biogenesis protein CcmH
SCNpilot_cont_1000_p_scaffold_3577_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7117..7638)
DNA (522bp) protein (174aa)
Cytochrome c-type biogenesis protein CcmG/DsbE,thiol:disulfide oxidoreductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIJ5_9PROT rbh
Cytochrome c-type biogenesis protein CcmG/DsbE,thiol:disulfide oxidoreductase {ECO:0000313|EMBL:CCU62243.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
periplasmic protein thiol; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE rbh
SCNpilot_cont_1000_p_scaffold_3577_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7638..9677)
DNA (2040bp) protein (680aa)
Cytochrome c heme lyase subunit CcmF n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI48_9PROT rbh
Cytochrome C biogenesis protein {ECO:0000313|EMBL:KIO48859.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
cytochrome c-type biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF rbh
SCNpilot_cont_1000_p_scaffold_3577_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9786..10232)
DNA (447bp) protein (149aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=CCME_NITMU
cytochrome c-type biogenesis protein CcmE; K02197 cytochrome c-type biogenesis protein CcmE
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_3577_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10216..10398)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGA6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62246.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K02196 heme exporter protein D
SCNpilot_cont_1000_p_scaffold_3577_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10410..11156)
DNA (747bp) protein (249aa)
Cytochrome c-type biogenesis protein CcmC,putative heme lyase for CcmE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI85_9PROT rbh
Heme ABC transporter permease {ECO:0000313|EMBL:KIO48857.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
heme exporter protein CcmC; K02195 heme exporter protein C rbh
SCNpilot_cont_1000_p_scaffold_3577_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11408..12028)
DNA (621bp) protein (207aa)
Heme exporter protein B n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIJ9_9PROT rbh
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
heme exporter protein CcmB; K02194 heme exporter protein B rbh
SCNpilot_cont_1000_p_scaffold_3577_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12069..12689)
DNA (621bp) protein (207aa)
cytochrome c biogenesis protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41] rbh
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI50_9PROT rbh
Displaying 16 items

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