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SCNpilot_cont_1000_p_scaffold_1244

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1244_1
unknown

Not on your lists

comp(2..418)
DNA (417bp) protein (139aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1244_2
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(415..636)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003740690
Uncharacterized protein {ECO:0000313|EMBL:AKI00555.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1244_3
unknown

Not on your lists

comp(738..1337)
DNA (600bp) protein (200aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1244_4
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1334..2620)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00035F32ED rbh
Site-specific recombinase XerD {ECO:0000313|EMBL:AKI00558.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
Phage integrase rbh
SCNpilot_cont_1000_p_scaffold_1244_5
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2852..3331
DNA (480bp) protein (160aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PGM5_9BURK rbh
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:ELX10762.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
3-demethylubiquinone-9 3-methyltransferase
SCNpilot_cont_1000_p_scaffold_1244_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3766..6189
DNA (2424bp) protein (808aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPY5_9PROT rbh
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:CCU61515.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
SCNpilot_cont_1000_p_scaffold_1244_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6252..8150)
DNA (1899bp) protein (633aa)
Probable potassium transport system protein kup n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGA4_9PROT rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
K+ potassium transporter; K03549 KUP system potassium uptake protein rbh
SCNpilot_cont_1000_p_scaffold_1244_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8318..8830)
DNA (513bp) protein (171aa)
phosphohistidine phosphatase SixA; K08296 phosphohistidine phosphatase [EC:3.1.3.-]
Phosphohistidine phosphatase SixA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGJ5_9PROT
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:CCU61512.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_p_scaffold_1244_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9004..9243)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF68_9PROT
Thioredoxin {ECO:0000313|EMBL:KIO48021.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1244_10
unknown

Not on your lists

9268..9450
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1244_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9428..10282)
DNA (855bp) protein (285aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] rbh
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPY0_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1244_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10650..11015
DNA (366bp) protein (122aa)
UPF0102 protein EBAPG3_5290 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGV2_9PROT
UPF0102 protein SQ11_13940 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K07460 putative endonuclease
SCNpilot_cont_1000_p_scaffold_1244_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11068..11655
DNA (588bp) protein (196aa)
21 kDa hemolysin n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGJ0_9PROT
Transporter {ECO:0000313|EMBL:KIO48017.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
transport-associated protein
SCNpilot_cont_1000_p_scaffold_1244_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11668..13035
DNA (1368bp) protein (456aa)
D-lactate dehydrogenase (cytochrome) (EC:1.1.2.4); K03777 D-lactate dehydrogenase [EC:1.1.1.28] rbh
Fe-S protein, homolog of lactate dehydrogenase SO1521 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF67_9PROT rbh
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:KIO48016.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_1244_15
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13109..14035)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI00035F2832
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL15926.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
SCNpilot_cont_1000_p_scaffold_1244_16
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14386..16050
DNA (1665bp) protein (555aa)
Phosphatase-related protein n=3 Tax=Amycolatopsis mediterranei RepID=D8HQ97_AMYMU rbh
phosphatase-like protein rbh
Phosphatase-related protein {ECO:0000313|EMBL:AEK46498.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_cont_1000_p_scaffold_1244_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16232..16903)
DNA (672bp) protein (224aa)
Adenosylhopane nucleosidase, HpnG n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMJ4_9PROT
Phosphorylase {ECO:0000313|EMBL:KIO49694.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
purine phosphorylase family protein 1
SCNpilot_cont_1000_p_scaffold_1244_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16927..18891)
DNA (1965bp) protein (655aa)
Squalene--hopene cyclase {ECO:0000313|EMBL:CCU64002.1}; EC=5.4.99.17 {ECO:0000313|EMBL:CCU64002.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
squalene cyclase; K06045 squalene-hopene cyclase [EC:5.4.99.17 4.2.1.129] rbh
Squalene--hopene cyclase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLZ3_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1244_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18976..19734)
DNA (759bp) protein (253aa)
Surface lipoprotein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXM4_9PROT rbh
Membrane protein {ECO:0000313|EMBL:KIO49695.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
VacJ-like lipoprotein; K04754 lipoprotein rbh
SCNpilot_cont_1000_p_scaffold_1244_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20052..22718)
DNA (2667bp) protein (889aa)
Hopanoid-associated RND transporter, HpnN n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLU6_9PROT rbh
Hopanoid-associated RND transporter, HpnN {ECO:0000313|EMBL:CCU63999.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K07003 rbh
SCNpilot_cont_1000_p_scaffold_1244_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22769..23422)
DNA (654bp) protein (218aa)
ABC-type transport system involved in resistance to organic solvents, auxiliary component n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMJ1_9PROT rbh
ABC-type transport system involved in resistance to organic solvents, auxiliary component {ECO:0000313|EMBL:CCU63998.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
toluene tolerance
SCNpilot_cont_1000_p_scaffold_1244_22
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23622..24731)
DNA (1110bp) protein (370aa)
Radical SAM n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5X2_NITMU rbh
radical SAM family protein rbh
Radical SAM {ECO:0000313|EMBL:ABB75849.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_1244_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25074..26318)
DNA (1245bp) protein (415aa)
Outer membrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXL8_9PROT rbh
Outer membrane protein {ECO:0000313|EMBL:CCU63995.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
porin rbh
SCNpilot_cont_1000_p_scaffold_1244_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26540..27373)
DNA (834bp) protein (278aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] rbh
Indole-3-glycerol phosphate synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLU2_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1244_25
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27373..28386)
DNA (1014bp) protein (338aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
anthranilate phosphoribosyltransferase (EC:2.4.2.18); K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] rbh
Anthranilate phosphoribosyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMI8_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1244_26
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28444..28998)
DNA (555bp) protein (185aa)
Anthranilate synthase component II {ECO:0000313|EMBL:KIO49701.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KIO49701.1};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; K01658 anthranilate synthase component II [EC:4.1.3.27] rbh
Anthranilate synthase, amidotransferase component @ Para-aminobenzoate synthase,amidotransferase component n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLY5_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1244_27
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29279..29887)
DNA (609bp) protein (203aa)
ATPase involved in DNA repair n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLT8_9PROT
ATPase involved in DNA repair {ECO:0000313|EMBL:CCU63989.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1244_28
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29964..31688)
DNA (1725bp) protein (575aa)
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLY1_9PROT rbh
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid {ECO:0000313|EMBL:CCU63987.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_1244_29
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31727..32395)
DNA (669bp) protein (223aa)
Ferric siderophore transport system, periplasmic binding protein TonB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKI2_9PROT rbh
Ferric siderophore transport system, periplasmic binding protein TonB {ECO:0000313|EMBL:CCU63986.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
TonB-dependent receptor rbh
SCNpilot_cont_1000_p_scaffold_1244_30
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32400..32804)
DNA (405bp) protein (135aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXK5_9PROT
Biopolymer transporter ExbD {ECO:0000313|EMBL:KIO49704.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD
Displaying items 1-30 of 33 in total

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