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SCNpilot_cont_1000_p_scaffold_1415

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1415_1
unknown

Not on your lists

comp(2..139)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1415_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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327..1271
DNA (945bp) protein (315aa)
Phosphate transport system permease protein PstC (TC 3.A.1.7.1) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJW1_9PROT rbh
Phosphate transport system permease protein PstC (TC 3.A.1.7.1) {ECO:0000313|EMBL:CCU63094.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
phosphate ABC transporter permease; K02037 phosphate transport system permease protein rbh
SCNpilot_cont_1000_p_scaffold_1415_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1365..2291
DNA (927bp) protein (309aa)
Phosphate transport system permease protein PstA (TC 3.A.1.7.1) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUP2_9PROT rbh
Phosphate transport system permease protein PstA (TC 3.A.1.7.1) {ECO:0000313|EMBL:CCU63095.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
phosphate ABC transporter permease; K02038 phosphate transport system permease protein rbh
SCNpilot_cont_1000_p_scaffold_1415_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2321..3097
DNA (777bp) protein (259aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702, ECO:0000313|EMBL:KIO48996.1}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702, ECO:0000256|SAAS:SAAS00042365};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
phosphate ABC transporter ATP-binding protein; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27] rbh
Phosphate import ATP-binding protein PstB n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=PSTB_NITMU rbh
SCNpilot_cont_1000_p_scaffold_1415_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3402..4160
DNA (759bp) protein (253aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] rbh
Triosephosphate isomerase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJY8_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1415_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4789..5145
DNA (357bp) protein (119aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJW5_9PROT
SCNpilot_cont_1000_p_scaffold_1415_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5150..5626
DNA (477bp) protein (159aa)
NADH dehydrogenase subunit B (EC:1.6.5.3); K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; EC=1.6.99.5 {ECO:0000313|EMBL:KIO48974.1};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
NADH-quinone oxidoreductase subunit B 2 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=NUOB2_NITMU rbh
SCNpilot_cont_1000_p_scaffold_1415_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5638..6252
DNA (615bp) protein (205aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
NADH dehydrogenase subunit C (EC:1.6.5.3); K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit C n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIB8_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1415_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6274..7527
DNA (1254bp) protein (418aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
NADH dehydrogenase subunit D (EC:1.6.5.3); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit D n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJZ3_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1415_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7559..8035
DNA (477bp) protein (159aa)
NADH-ubiquinone oxidoreductase chain E {ECO:0000313|EMBL:CCU63103.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CCU63103.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
NADH dehydrogenase subunit E (EC:1.6.5.3); K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
NADH-ubiquinone oxidoreductase chain E n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKK1_9PROT
SCNpilot_cont_1000_p_scaffold_1415_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8032..9309
DNA (1278bp) protein (426aa)
NADH-ubiquinone oxidoreductase chain F {ECO:0000313|EMBL:CCU63104.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CCU63104.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] rbh
NADH-ubiquinone oxidoreductase chain F n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJW9_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1415_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9400..11835
DNA (2436bp) protein (812aa)
NADH-ubiquinone oxidoreductase chain G {ECO:0000313|EMBL:CCU63105.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CCU63105.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
NADH dehydrogenase subunit G (EC:1.6.5.3); K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3] rbh
NADH-ubiquinone oxidoreductase chain G n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUQ5_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1415_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11867..12967
DNA (1101bp) protein (367aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; EC=1.6.99.5 {ECO:0000313|EMBL:KIO48968.1};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
respiratory-chain NADH dehydrogenase subunit 1; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit H n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIC7_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1415_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12981..13469
DNA (489bp) protein (163aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; EC=1.6.99.5 {ECO:0000313|EMBL:KIO48967.1};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
NADH dehydrogenase subunit I (EC:1.6.5.3); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit I n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJZ8_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1415_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13488..14093
DNA (606bp) protein (202aa)
NADH-ubiquinone oxidoreductase chain J {ECO:0000313|EMBL:CCU63109.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CCU63109.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] rbh
NADH-ubiquinone oxidoreductase chain J n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJX2_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1415_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14145..14450
DNA (306bp) protein (102aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456, ECO:0000313|EMBL:KIO48965.1}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
NAD(P)H-quinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GIS7_NITSI
SCNpilot_cont_1000_p_scaffold_1415_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14524..16479
DNA (1956bp) protein (652aa)
NADH-ubiquinone oxidoreductase chain L {ECO:0000313|EMBL:CCU63111.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CCU63111.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
proton-translocating NADH-quinone oxidoreductase, chain L (EC:1.6.99.5); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] rbh
NADH-ubiquinone oxidoreductase chain L n=1 Tax=Nitrosospira sp. APG3 RepID=M5DID3_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1415_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16589..18073
DNA (1485bp) protein (495aa)
NADH:ubiquinone oxidoreductase subunit M {ECO:0000313|EMBL:KIO48964.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KIO48964.1};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
NADH dehydrogenase subunit M (EC:1.6.5.3); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] rbh
NADH-ubiquinone oxidoreductase chain M n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK02_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1415_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18114..19565
DNA (1452bp) protein (484aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
NADH dehydrogenase subunit N (EC:1.6.5.3); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit N n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKL1_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1415_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19761..20882)
DNA (1122bp) protein (374aa)
L-sorbosone dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK08_9PROT rbh
L-sorbosone dehydrogenase {ECO:0000313|EMBL:KIO48960.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
putative membrane-bound dehydrogenase oxidoreductase protein rbh
SCNpilot_cont_1000_p_scaffold_1415_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21053..22930
DNA (1878bp) protein (626aa)
Chaperone protein HtpG n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKL5_9PROT rbh
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
heat shock protein 90; K04079 molecular chaperone HtpG rbh
Displaying 21 items

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