ggKbase home page

SCNpilot_cont_1000_p_scaffold_1815

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1815_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33..704)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIE7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO49208.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1815_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(756..1667)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DII7_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU62417.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_1815_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1807..2175)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGM7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62416.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1815_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2566..5283
DNA (2718bp) protein (906aa)
dolichyl-phosphate beta-D-mannosyltransferase (EC:2.4.1.83); K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83] rbh
Dolichyl-phosphate beta-D-mannosyltransferase {ECO:0000313|EMBL:ABB75061.1}; EC=2.4.1.83 {ECO:0000313|EMBL:ABB75061.1};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Dolichyl-phosphate beta-D-mannosyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y860_NITMU rbh
SCNpilot_cont_1000_p_scaffold_1815_5
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5578..5907
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00037CBFBC
Thioredoxin {ECO:0000313|EMBL:KIF83151.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
thiol-disulfide isomerase/thioredoxin; K03671 thioredoxin 1
SCNpilot_cont_1000_p_scaffold_1815_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6056..6496)
DNA (441bp) protein (147aa)
Heat shock protein, Hsp20 family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGM4_9PROT
Heat shock protein, Hsp20 family {ECO:0000313|EMBL:CCU62411.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
heat shock protein Hsp20; K13993 HSP20 family protein
SCNpilot_cont_1000_p_scaffold_1815_7
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6687..7736)
DNA (1050bp) protein (350aa)
beta-hexosaminidase (EC:3.2.1.52); K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] rbh
Beta-hexosaminidase {ECO:0000255|HAMAP-Rule:MF_00364}; EC=3.2.1.52 {ECO:0000255|HAMAP-Rule:MF_00364};; Beta-N-acetylhexosaminidase {ECO:0000255|HAMAP-Rule:MF_00364}; N-acetyl-beta-glucosaminidase {ECO:0000255|HAMAP-Rule:MF_00364}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Beta-hexosaminidase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=NAGZ_NITMU rbh
SCNpilot_cont_1000_p_scaffold_1815_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7818..8195)
DNA (378bp) protein (126aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
acpS; 4'-phosphopantetheinyl transferase (EC:2.7.8.7); K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
Holo-[acyl-carrier-protein] synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIV3_9PROT
SCNpilot_cont_1000_p_scaffold_1815_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8192..8992)
DNA (801bp) protein (267aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
pyridoxine 5'-phosphate synthase; K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2] rbh
Pyridoxine 5'-phosphate synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DII0_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1815_10
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9149..9526
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y866_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB75055.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_1815_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9676..10413)
DNA (738bp) protein (246aa)
DNA repair protein RecO n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGL3_9PROT rbh
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
recO; DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) rbh
SCNpilot_cont_1000_p_scaffold_1815_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10442..11383)
DNA (942bp) protein (314aa)
GTPase Era n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSM4_9PROT rbh
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
era; GTP-binding protein Era; K03595 GTP-binding protein Era rbh
SCNpilot_cont_1000_p_scaffold_1815_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11435..12115)
DNA (681bp) protein (227aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease 3; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
rnc; ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] rbh
Ribonuclease 3 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIC9_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1815_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12203..12988)
DNA (786bp) protein (262aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
peptidase S26A, signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] rbh
Signal peptidase I n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIU1_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1815_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13055..14848)
DNA (1794bp) protein (598aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Elongation factor 4 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIH0_9PROT rbh
GTP-binding protein LepA; K03596 GTP-binding protein LepA rbh
SCNpilot_cont_1000_p_scaffold_1815_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15043..15309)
DNA (267bp) protein (89aa)
Glutaredoxin 2 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGK9_9PROT
Glutaredoxin 2 {ECO:0000313|EMBL:CCU62391.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
glutaredoxin 2
SCNpilot_cont_1000_p_scaffold_1815_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15299..16714)
DNA (1416bp) protein (472aa)
peptidase S1C, Do; K01362 [EC:3.4.21.-] rbh
Serine protease MucD/AlgY associated with sigma factor RpoE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSM0_9PROT rbh
Serine protease MucD/AlgY associated with sigma factor RpoE {ECO:0000313|EMBL:CCU62390.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_p_scaffold_1815_18
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17002..18012)
DNA (1011bp) protein (337aa)
Sigma E regulatory protein, MucB/RseB n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y876_NITMU rbh
sigma E regulatory protein, MucB/RseB; K03598 sigma-E factor negative regulatory protein RseB rbh
Sigma E regulatory protein, MucB/RseB {ECO:0000313|EMBL:ABB75045.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_1815_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18009..18572)
DNA (564bp) protein (188aa)
Sigma factor RpoE negative regulatory protein RseA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIT8_9PROT
Sigma factor RpoE negative regulatory protein RseA {ECO:0000313|EMBL:CCU62388.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
anti sigma-E protein RseA; K03597 sigma-E factor negative regulatory protein RseA
SCNpilot_cont_1000_p_scaffold_1815_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18574..19176)
DNA (603bp) protein (201aa)
RNA polymerase sigma factor n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIG8_9PROT rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
RNA polymerase sigma factor RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily rbh
SCNpilot_cont_1000_p_scaffold_1815_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19265..20128
DNA (864bp) protein (288aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16]
L-aspartate oxidase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGK4_9PROT
SCNpilot_cont_1000_p_scaffold_1815_22
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20211..20456
DNA (246bp) protein (82aa)
L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16]
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
L-aspartate oxidase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y881_NITMU
Displaying 22 items

View Taxonomy