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SCNpilot_cont_1000_p_scaffold_6036

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_6036_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1..354
DNA (354bp) protein (118aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitr
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
Phosphoribosylaminoimidazole carboxylase ATPase subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFP8_9PROT
SCNpilot_cont_1000_p_scaffold_6036_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

367..1299
DNA (933bp) protein (311aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase; K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] rbh
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHS4_9PROT rbh
SCNpilot_cont_1000_p_scaffold_6036_3
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1292..1522
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVY1_9BACT
Plasmid pAcX50a, complete sequence {ECO:0000313|EMBL:AJE23470.1}; TaxID=1328314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroococcum NCIMB 8003.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_6036_4
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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1509..1835
DNA (327bp) protein (109aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
transcriptional modulator of MazE/toxin, MazF; K07171 mRNA interferase [EC:3.1.-.-]
mRNA interferase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JME2_9GAMM
SCNpilot_cont_1000_p_scaffold_6036_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1850..2575)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI15_9PROT
Membrane protein {ECO:0000313|EMBL:KIO50274.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_6036_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2688..2996)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHL7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62054.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_6036_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3302..4066
DNA (765bp) protein (255aa)
Poly-gamma-glutamate synthesis protein / capsule biosynthesis protein capA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFQ2_9PROT
Poly-gamma-glutamate synthesis protein / capsule biosynthesis protein capA {ECO:0000313|EMBL:CCU62056.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
poly-gamma-glutamate synthesis protein; K07282 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein)
SCNpilot_cont_1000_p_scaffold_6036_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4328..4756)
DNA (429bp) protein (143aa)
Pyrimidine dimer DNA glycosylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DRJ8_9PROT
Pyrimidine dimer DNA glycosylase {ECO:0000313|EMBL:CCU62055.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
pyrimidine dimer DNA glycosylase
SCNpilot_cont_1000_p_scaffold_6036_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4765..5346)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHS8_9PROT rbh
Amidohydrolase {ECO:0000313|EMBL:KIO50263.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
amidohydrolase 2; K07045 rbh
SCNpilot_cont_1000_p_scaffold_6036_10
unknown

Not on your lists

5372..5959
DNA (588bp) protein (196aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_6036_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6474..6782)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI17_9PROT
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K09888 cell division protein ZapA
SCNpilot_cont_1000_p_scaffold_6036_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6769..6978)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHM1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62059.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_6036_13
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7488..9605
DNA (2118bp) protein (706aa)
TonB-dependent receptor n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBD6_NITMU rbh
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
TonB-dependent receptor {ECO:0000313|EMBL:ABB73935.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_6036_14
unknown

Not on your lists

comp(9610..9738)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_6036_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9794..11518
DNA (1725bp) protein (575aa)
Lipid A export ATP-binding/permease protein MsbA {ECO:0000256|HAMAP-Rule:MF_01703}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01703};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-]
Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHT3_9PROT rbh
SCNpilot_cont_1000_p_scaffold_6036_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11573..12379)
DNA (807bp) protein (269aa)
UDP-N-acetylglucosamine 4,6-dehydratase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI20_9PROT
UDP-N-acetylglucosamine 4,6-dehydratase {ECO:0000313|EMBL:CCU62063.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
polysaccharide biosynthesis protein CapD
SCNpilot_cont_1000_p_scaffold_6036_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12336..13433)
DNA (1098bp) protein (366aa)
UDP-N-acetylglucosamine 4,6-dehydratase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI20_9PROT rbh
UDP-N-acetylglucosamine 4,6-dehydratase {ECO:0000313|EMBL:CCU62063.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
polysaccharide biosynthesis protein CapD rbh
SCNpilot_cont_1000_p_scaffold_6036_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13435..14436)
DNA (1002bp) protein (334aa)
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHM8_9PROT rbh
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase {ECO:0000313|EMBL:CCU62064.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
glycosyl transferase family protein rbh
SCNpilot_cont_1000_p_scaffold_6036_19
unknown

Not on your lists

comp(14449..14769)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_6036_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14784..16034
DNA (1251bp) protein (417aa)
Proton/glutamate symport protein @ Sodium/glutamate symport protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFR0_9PROT rbh
Proton/glutamate symport protein @ Sodium/glutamate symport protein {ECO:0000313|EMBL:CCU62066.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Sodium:dicarboxylate symporter rbh
SCNpilot_cont_1000_p_scaffold_6036_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16419..17264
DNA (846bp) protein (282aa)
RIO-like kinase; K07178 RIO kinase 1 [EC:2.7.11.1]
RIO-like kinase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GKU7_NITSI
Kinase {ECO:0000313|EMBL:KIO50257.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_6036_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17362..18549
DNA (1188bp) protein (396aa)
Putative signal peptide protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSJ5_9PROT rbh
Putative signal peptide protein {ECO:0000313|EMBL:CCU62360.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
BNR repeat-containing glycosyl hydrolase rbh
Displaying 22 items

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