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SCNpilot_cont_1000_p_scaffold_6953

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_6953_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1..93
DNA (93bp) protein (31aa)
RNA polymerase-binding transcription factor DksA n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GXD1_METFK
TraR/DksA family transcriptional regulator; K06204 DnaK suppressor protein
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_cont_1000_p_scaffold_6953_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(344..2362)
DNA (2019bp) protein (673aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] rbh
Polyribonucleotide nucleotidyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKK3_9PROT rbh
SCNpilot_cont_1000_p_scaffold_6953_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2580..2849)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXM9_9PROT
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
SCNpilot_cont_1000_p_scaffold_6953_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2994..3590)
DNA (597bp) protein (199aa)
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPX6_9PROT
Photosynthetic protein synthase I {ECO:0000313|EMBL:KIO48015.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
electron transport protein SCO1/SenC; K07152
SCNpilot_cont_1000_p_scaffold_6953_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3600..4493)
DNA (894bp) protein (298aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] rbh
Protoheme IX farnesyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DG97_9PROT rbh
SCNpilot_cont_1000_p_scaffold_6953_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4624..5166)
DNA (543bp) protein (181aa)
Putative transmembrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGV0_9PROT
Membrane protein {ECO:0000313|EMBL:KIO48013.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
putative transmembrane protein
SCNpilot_cont_1000_p_scaffold_6953_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5204..5785)
DNA (582bp) protein (194aa)
Cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGI6_9PROT
Cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion {ECO:0000313|EMBL:CCU61502.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SURF1 family protein
SCNpilot_cont_1000_p_scaffold_6953_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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5987..6178
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF66_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61501.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
putative transmembrane protein
SCNpilot_cont_1000_p_scaffold_6953_9
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6205..6357)
DNA (153bp) protein (51aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Cytochrome c oxidase, subunit III n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y849_NITMU
Cytochrome c oxidase, subunit III {ECO:0000313|EMBL:ABB75072.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Displaying 9 items

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