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SCNpilot_cont_1000_p_scaffold_2182

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2182_1
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..1165)
DNA (1164bp) protein (388aa)
Two-component system sensor-response regulator hybrid protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7USR2_PSEUP
two-component system sensor-response regulator hybrid protein
Two-component system sensor-response regulator hybrid protein {ECO:0000313|EMBL:AER57313.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_cont_1000_p_scaffold_2182_2
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1233..2615)
DNA (1383bp) protein (461aa)
hypothetical protein; K01752 L-serine dehydratase [EC:4.3.1.17] rbh
serine dehydratase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI0003796229 rbh
Serine dehydratase {ECO:0000313|EMBL:AJC44549.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
SCNpilot_cont_1000_p_scaffold_2182_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2714..2938
DNA (225bp) protein (75aa)
glutaredoxin n=1 Tax=Xanthomonas sacchari RepID=UPI0002631601
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_1000_p_scaffold_2182_4
unknown

Not on your lists

2935..3405
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2182_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3430..3996)
DNA (567bp) protein (189aa)
Uncharacterized protein n=2 Tax=Stenotrophomonas maltophilia RepID=T5L8M0_STEMA rbh
YciI family periplasmic protein {ECO:0000313|EMBL:BAO21241.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_2182_6
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3993..4571)
DNA (579bp) protein (193aa)
cytochrome B561 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F37483 rbh
Cytochrome b561 {ECO:0000313|EMBL:EZP44922.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Cytochrome B561 rbh
SCNpilot_cont_1000_p_scaffold_2182_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4568..5248)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FB1B8B
Stenotrophomonas maltophilia strain ZBG7B contig_29, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86422.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2182_8
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5581..9138
DNA (3558bp) protein (1186aa)
histidine kinase n=1 Tax=Xanthomonas sacchari RepID=UPI00026315FC rbh
Two component system sensor-response regulator hybrid protein {ECO:0000313|EMBL:ELQ01616.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
two component system sensor-response regulator hybrid protein rbh
SCNpilot_cont_1000_p_scaffold_2182_9
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9139..10560)
DNA (1422bp) protein (474aa)
MFS transporter n=1 Tax=Xanthomonas RepID=UPI00036F1495 rbh
MFS transporter {ECO:0000313|EMBL:AJC48006.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
MFS transporter rbh
SCNpilot_cont_1000_p_scaffold_2182_10
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10694..11767)
DNA (1074bp) protein (358aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37] rbh
uroporphyrinogen decarboxylase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E28DF8 rbh
SCNpilot_cont_1000_p_scaffold_2182_11
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11827..12078)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Xanthomonas RepID=UPI00026315F9
Uncharacterized protein {ECO:0000313|EMBL:AJC48002.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2182_12
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12150..13259)
DNA (1110bp) protein (370aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
aroB; 3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4] rbh
3-dehydroquinate synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030ED554 rbh
SCNpilot_cont_1000_p_scaffold_2182_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13256..13798)
DNA (543bp) protein (181aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
aroK; shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
shikimate kinase n=1 Tax=Xanthomonadaceae RepID=UPI00029B4065
SCNpilot_cont_1000_p_scaffold_2182_14
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13897..14100
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D806C1
Uncharacterized protein {ECO:0000313|EMBL:AHY58102.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein; K09165 hypothetical protein
SCNpilot_cont_1000_p_scaffold_2182_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14107..14922)
DNA (816bp) protein (272aa)
hypothetical protein; K15918 D-glycerate 3-kinase [EC:2.7.1.31] rbh
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SSA1_STRM5 rbh
Uncharacterized protein {ECO:0000313|EMBL:ACF52733.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
SCNpilot_cont_1000_p_scaffold_2182_16
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14965..15564
DNA (600bp) protein (200aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
pyridoxine/pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5); K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] rbh
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Pseudomonas geniculata RepID=UPI000299FCD5 rbh
SCNpilot_cont_1000_p_scaffold_2182_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15561..15926
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JZI8_STEMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM52378.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
SCNpilot_cont_1000_p_scaffold_2182_18
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16014..16643
DNA (630bp) protein (210aa)
Periplasmic binding protein (Fragment) n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7G6J4_XANCT
Periplasmic binding protein {ECO:0000313|EMBL:ELQ01605.1}; Flags: Fragment;; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_cont_1000_p_scaffold_2182_19
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16779..17759)
DNA (981bp) protein (327aa)
metallo beta-lactamase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037D9F9D rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY57139.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
beta-lactamase-like protein
SCNpilot_cont_1000_p_scaffold_2182_20
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17873..19096)
DNA (1224bp) protein (408aa)
citrate synthase; K01647 citrate synthase [EC:2.3.3.1] rbh
Citrate synthase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GV96_XANCT rbh
Citrate synthase {ECO:0000313|EMBL:ELQ09785.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
SCNpilot_cont_1000_p_scaffold_2182_21
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19210..20097
DNA (888bp) protein (296aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
methylisocitrate lyase; K03417 methylisocitrate lyase [EC:4.1.3.30] rbh
2-methylisocitrate lyase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035EF1D1 rbh
SCNpilot_cont_1000_p_scaffold_2182_22
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20129..20728
DNA (600bp) protein (200aa)
cyclic nucleotide-binding protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00037675BE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBA15157.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
SCNpilot_cont_1000_p_scaffold_2182_23
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20754..21914
DNA (1161bp) protein (387aa)
methylcitrate synthase (EC:2.3.3.5); K01659 2-methylcitrate synthase [EC:2.3.3.5] rbh
methylcitrate synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DACC95 rbh
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_cont_1000_p_scaffold_2182_24
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22069..24687
DNA (2619bp) protein (873aa)
acnA; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3] rbh
Putative aconitate hydratase {ECO:0000313|EMBL:CAQ47025.1}; EC=4.2.1.3 {ECO:0000313|EMBL:CAQ47025.1};; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
Putative aconitate hydratase n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FQH6_STRMK rbh
SCNpilot_cont_1000_p_scaffold_2182_25
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24739..25926
DNA (1188bp) protein (396aa)
3-methylitaconate isomerase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E239CE rbh
3-methylitaconate isomerase {ECO:0000313|EMBL:AHY58112.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
AcnD-accessory protein PrpF; K09788 hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_2182_26
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26027..26614
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000371ADAA
Stenotrophomonas maltophilia strain ZBG7B contig_29, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86406.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
alpha-2-macroglobulin domain-containing protein; K06894
Displaying 26 items

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