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SCNpilot_cont_1000_p_scaffold_2916

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2916_1
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..355
DNA (354bp) protein (118aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas gardneri ATCC 19865 RepID=F0C815_9XANT
Uncharacterized protein {ECO:0000313|EMBL:KHL54181.1}; TaxID=92824 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. cannabis.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2916_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(739..2013)
DNA (1275bp) protein (425aa)
gltA; type II citrate synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] rbh
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
type II citrate synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000302FA8D rbh
SCNpilot_cont_1000_p_scaffold_2916_3
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2375..2617)
DNA (243bp) protein (81aa)
50S ribosomal protein L31 n=1 Tax=Xanthomonas RepID=UPI000262B3D9
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
rpmE2; 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
SCNpilot_cont_1000_p_scaffold_2916_4
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2701..3642)
DNA (942bp) protein (314aa)
inosine-uridine preferring nucleoside hydrolase; K01239 purine nucleosidase [EC:3.2.2.1] rbh
inosine-uridine preferring nucleoside hydrolase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031FBEC7 rbh
Nucleoside hydrolase {ECO:0000313|EMBL:AHY57868.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_cont_1000_p_scaffold_2916_5
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3708..5852)
DNA (2145bp) protein (715aa)
recG; ATP-dependent DNA helicase (EC:3.6.1.-); K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] rbh
ATP-dependent DNA helicase RecG n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000369BA84 rbh
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:AJC47307.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
SCNpilot_cont_1000_p_scaffold_2916_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5862..6245)
DNA (384bp) protein (128aa)
Endoribonuclease L-PSP n=2 Tax=Stenotrophomonas maltophilia RepID=I0KSB6_STEMA
endoribonuclease L-PSP; K07567 TdcF protein
Endoribonuclease L-PSP {ECO:0000313|EMBL:EMI48694.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
SCNpilot_cont_1000_p_scaffold_2916_7
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6496..8655)
DNA (2160bp) protein (720aa)
spoT; putative guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC:3.1.7.2); K01139 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2] rbh
bifunctional (p)ppGpp synthetase II/ guanosine-3'''',5''''-bis pyrophosphate 3''''-pyrophosphohydrolase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DF6B32 rbh
(P)ppGpp synthetase {ECO:0000313|EMBL:AHY57864.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_cont_1000_p_scaffold_2916_8
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8915..9214)
DNA (300bp) protein (100aa)
DNA-directed RNA polymerase subunit omega (EC:2.7.7.6); K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Steno
DNA-directed RNA polymerase subunit omega n=11 Tax=Stenotrophomonas RepID=RPOZ_STRM5
SCNpilot_cont_1000_p_scaffold_2916_9
Xanthomonas oryzae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9399..10010)
DNA (612bp) protein (204aa)
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] rbh
Guanylate kinase {ECO:0000255|HAMAP-Rule:MF_00328}; EC=2.7.4.8 {ECO:0000255|HAMAP-Rule:MF_00328};; GMP kinase {ECO:0000255|HAMAP-Rule:MF_00328}; TaxID=291331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85).;"
Guanylate kinase n=3 Tax=Xanthomonas oryzae pv. oryzae RepID=KGUA_XANOM rbh
SCNpilot_cont_1000_p_scaffold_2916_10
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10111..11373)
DNA (1263bp) protein (421aa)
Beta-lactamase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T2T3_CAUSK rbh
beta-lactamase rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_1000_p_scaffold_2916_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11647..12507)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TSZ2_STEMA rbh
Uncharacterized protein {ECO:0000313|EMBL:EMI48706.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_2916_12
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12620..13297
DNA (678bp) protein (226aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
rph; ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56] rbh
ribonuclease PH n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031219A7 rbh
SCNpilot_cont_1000_p_scaffold_2916_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13294..13683
DNA (390bp) protein (130aa)
Glyoxalase n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TYB7_STEMA
Glyoxalase {ECO:0000313|EMBL:EMI48708.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
glyoxalase
SCNpilot_cont_1000_p_scaffold_2916_14
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13680..14276
DNA (597bp) protein (199aa)
nucleoside-triphosphatase rdgB (EC:3.6.1.15); K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] rbh
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae;
Non-canonical purine NTP pyrophosphatase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K1E7_STEMA rbh
SCNpilot_cont_1000_p_scaffold_2916_15
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14303..15529
DNA (1227bp) protein (409aa)
oxygen-independent coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] rbh
coproporphyrinogen III oxidase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031DBFF0 rbh
Coproporphyrinogen III oxidase {ECO:0000313|EMBL:AHY57857.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_cont_1000_p_scaffold_2916_16
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15611..16714
DNA (1104bp) protein (368aa)
thymidine phosphorylase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DE6D7D
Uncharacterized protein {ECO:0000313|EMBL:AHY57856.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2916_17
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16714..18003
DNA (1290bp) protein (430aa)
thymidine phosphorylase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DE6D7D rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY57856.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_2916_18
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18000..18347
DNA (348bp) protein (116aa)
Type IV pilus assembly PilZ n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5THT5_STEMA
Type IV pilus assembly PilZ {ECO:0000313|EMBL:EMI48712.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
type IV pilus assembly PilZ
SCNpilot_cont_1000_p_scaffold_2916_19
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18427..19755
DNA (1329bp) protein (443aa)
Xaa-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582}; Short=X-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279};; EC=3.4.13.9 {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582};; Imidodipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; Proline dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
pepQ; proline dipeptidase (EC:3.4.13.9); K01271 Xaa-Pro dipeptidase [EC:3.4.13.9] rbh
Xaa-Pro dipeptidase n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=PEPQ_STRMK rbh
SCNpilot_cont_1000_p_scaffold_2916_20
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20316..21641)
DNA (1326bp) protein (442aa)
aminopeptidase P; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] rbh
proline aminopeptidase P II n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E0D071 rbh
Strain LMCP11 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25965.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
SCNpilot_cont_1000_p_scaffold_2916_21
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21649..22194)
DNA (546bp) protein (182aa)
UPF0149 protein BN444_02069 n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SWB6_XANCT
UPF0149 protein BN444_02069 {ECO:0000256|HAMAP-Rule:MF_00346}; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
hypothetical protein; K09895 hypothetical protein
SCNpilot_cont_1000_p_scaffold_2916_22
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22431..22730
DNA (300bp) protein (100aa)
cell division ZapA family protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F194D9
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein; K09888 cell division protein ZapA
SCNpilot_cont_1000_p_scaffold_2916_23
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23106..23696
DNA (591bp) protein (197aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
5-formyltetrahydrofolate cyclo-ligase (EC:6.3.3.2); K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D78F2D
SCNpilot_cont_1000_p_scaffold_2916_24
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23693..24178
DNA (486bp) protein (162aa)
EVE domain-containing protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D853AF
Stenotrophomonas maltophilia strain ZBG7B contig_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86913.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
hypothetical protein
Displaying 24 items

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