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SCNpilot_cont_1000_p_scaffold_2976

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2976_1
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..1064)
DNA (1062bp) protein (354aa)
Peptidase M28 n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L399_9GAMM
Stenotrophomonas maltophilia strain ZBG7B contig_13, whole genome shotgun sequence {ECO:0000313|EMBL:KIP87216.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
peptidase M28
SCNpilot_cont_1000_p_scaffold_2976_2
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1189..2070)
DNA (882bp) protein (294aa)
Nitrilase n=7 Tax=Xanthomonas RepID=Q8PIP6_XANAC rbh
nthA; nitrilase rbh
Nitrilase {ECO:0000313|EMBL:AAM37694.1}; TaxID=190486 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. citri (strain 306).;"
SCNpilot_cont_1000_p_scaffold_2976_3
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2067..2672)
DNA (606bp) protein (202aa)
Acetyltransferase, GNAT family n=4 Tax=Xanthomonas RepID=H1XI24_9XANT
Uncharacterized protein {ECO:0000313|EMBL:CEH55660.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2976_4

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comp(2798..3031)
DNA (234bp) protein (78aa)
Putative integron gene cassette protein (Fragment) n=1 Tax=uncultured bacterium RepID=B0BJS6_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAP49034.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_2976_5
unknown

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comp(3050..3436)
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2976_6
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3433..4761)
DNA (1329bp) protein (443aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FD0239 rbh
Membrane protein {ECO:0000313|EMBL:AJC47867.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein; K06143 inner membrane protein rbh
SCNpilot_cont_1000_p_scaffold_2976_7
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4979..7993
DNA (3015bp) protein (1005aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KT39_9BURK rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EGI77035.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
diguanylate cyclase/phosphodiesterase rbh
SCNpilot_cont_1000_p_scaffold_2976_8
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8015..9457)
DNA (1443bp) protein (481aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
histidine kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FE44B9 rbh
sensory histidine kinase CreC rbh
SCNpilot_cont_1000_p_scaffold_2976_9
Xanthomonas alfalfae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10031..10723)
DNA (693bp) protein (231aa)
Two-component system regulatory protein n=3 Tax=Xanthomonas RepID=Q3BR67_XANC5 rbh
creB; DNA-binding response regulator CreB; K07663 two-component system, OmpR family, catabolic regulation response regulator CreB rbh
DNA-binding response regulator CreB {ECO:0000313|EMBL:AEO43055.1}; TaxID=981368 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. citrumelo F1.;"
SCNpilot_cont_1000_p_scaffold_2976_10
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10769..11626
DNA (858bp) protein (286aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
protein involved in catabolism of external DNA n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00037F2FAA rbh
hypothetical protein; K07115 rbh
SCNpilot_cont_1000_p_scaffold_2976_11
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11799..12344
DNA (546bp) protein (182aa)
acyl-CoA synthetase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000309E761 rbh
Acyl-CoA synthetase {ECO:0000313|EMBL:AHY59755.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
N-acetyltransferase GCN5 rbh
SCNpilot_cont_1000_p_scaffold_2976_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12553..15921
DNA (3369bp) protein (1123aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] rbh
Transcription-repair-coupling factor n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K339_STEMA rbh
SCNpilot_cont_1000_p_scaffold_2976_13
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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16014..16640
DNA (627bp) protein (209aa)
Metal dependent phosphohydrolase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WUM1_PSEUU
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ADV27723.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_cont_1000_p_scaffold_2976_14
Kineosphaera limosa, Kineosphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(16659..18158)
DNA (1500bp) protein (500aa)
Cardiolipin synthetase n=1 Tax=Kineosphaera limosa NBRC 100340 RepID=K6WBF0_9MICO rbh
Cardiolipin synthetase {ECO:0000313|EMBL:GAB96565.1}; TaxID=1184609 species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Kineosphaera.;" source="Kineosphaera limosa NBRC 100340.;"
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
SCNpilot_cont_1000_p_scaffold_2976_15
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18367..18810
DNA (444bp) protein (148aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL36408.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
SCNpilot_cont_1000_p_scaffold_2976_16
Deinococcus geothermalis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

18807..19136
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Comamonas sp. B-9 RepID=UPI000395B751
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF45511.1}; TaxID=319795 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus geothermalis (strain DSM 11300).;"
SCNpilot_cont_1000_p_scaffold_2976_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19313..20155)
DNA (843bp) protein (281aa)
peptidase, m13 family; K07386 putative endopeptidase [EC:3.4.24.-]
Endothelin-converting enzyme 1 n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5U4I2_STEMA
Peptidase {ECO:0000313|EMBL:EQM86233.1}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
Displaying 17 items

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