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SCNpilot_cont_1000_p_scaffold_3302

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3302_1
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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600..782
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FPT7_STRMK
Uncharacterized protein {ECO:0000313|EMBL:AHY58199.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3302_2
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

854..2224
DNA (1371bp) protein (457aa)
acid virulence protein B n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003744846 rbh
Virulence protein {ECO:0000313|EMBL:ETC88992.1}; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortorum pv. carotae str. M081.;"
type IV secretion system VirJ-like protein rbh
SCNpilot_cont_1000_p_scaffold_3302_3
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2190..4748)
DNA (2559bp) protein (853aa)
hypothetical protein; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3] rbh
membrane protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262B10F rbh
Membrane protein {ECO:0000313|EMBL:AJC45417.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
SCNpilot_cont_1000_p_scaffold_3302_4
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4961..5539
DNA (579bp) protein (193aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003627166
Membrane protein {ECO:0000313|EMBL:EZP44162.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3302_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5590..5937
DNA (348bp) protein (116aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Rhodanobacter denitrificans RepID=M4NEP9_9GAMM
putative translation initiation inhibitor, yjgF family
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:AGG89325.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_1000_p_scaffold_3302_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6023..6637)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K4N6_STEMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM50646.1}; Flags: Precursor;; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
SCNpilot_cont_1000_p_scaffold_3302_7
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6798..8081)
DNA (1284bp) protein (428aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003057D4B rbh
Membrane protein {ECO:0000313|EMBL:AHY59621.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative transmembrane protein rbh
SCNpilot_cont_1000_p_scaffold_3302_8
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8084..9157)
DNA (1074bp) protein (358aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR67791.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Putative uncharacterized protein id=3423621 bin=GWA1_ZB2_49_26 species=Chlorobium limicola genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3302_9
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9272..10153)
DNA (882bp) protein (294aa)
Plasmid replication/partition related protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TNK7_STEMA rbh
Plasmid replication/partition related protein {ECO:0000313|EMBL:EMI50730.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
Plasmid replication/partition related protein rbh
SCNpilot_cont_1000_p_scaffold_3302_10
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10270..10629
DNA (360bp) protein (120aa)
Putative uncharacterized protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KV53_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGI76328.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
hypothetical membrane protein; K08987 putative membrane protein
SCNpilot_cont_1000_p_scaffold_3302_11
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10684..11040
DNA (357bp) protein (119aa)
Putative membrane protein required for alginate biosynthesis n=1 Tax=Polaromonas sp. CF318 RepID=J3CSR8_9BURK
Putative membrane protein required for alginate biosynthesis {ECO:0000313|EMBL:EJL77759.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
membrane protein GlpM; K02442 membrane protein GlpM
SCNpilot_cont_1000_p_scaffold_3302_12
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11146..12045
DNA (900bp) protein (300aa)
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] rbh
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UTP8_PSEUP rbh
SCNpilot_cont_1000_p_scaffold_3302_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12121..12555)
DNA (435bp) protein (145aa)
Peptidase propeptide and ypeb domain-containing protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYH0_9GAMM
Peptidase propeptide and ypeb domain-containing protein {ECO:0000313|EMBL:EIL92261.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
propeptide PepSY amd peptidase M4
SCNpilot_cont_1000_p_scaffold_3302_14
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12770..14206
DNA (1437bp) protein (479aa)
MFS transporter n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036BBC8F rbh
MFS transporter {ECO:0000313|EMBL:AHY59617.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
Major facilitator superfamily (MFS_1) transporter rbh
SCNpilot_cont_1000_p_scaffold_3302_15
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14355..14816)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E0BD9A
Bacteriohemerythrin {ECO:0000256|HAMAP-Rule:MF_00556}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
Hemerythrin-like protein PA1673
SCNpilot_cont_1000_p_scaffold_3302_16
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14904..16214)
DNA (1311bp) protein (437aa)
Response regulator pleD {ECO:0000313|EMBL:CCP10779.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CCP10779.1};; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
diguanylate cyclase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EB8E2D rbh
response regulator receiver modulated diguanylate cyclase rbh
SCNpilot_cont_1000_p_scaffold_3302_17
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16374..17039
DNA (666bp) protein (222aa)
Transcriptional regulator {ECO:0000313|EMBL:AHX13571.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Winged helix family two component transcriptional regulator id=2804000 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
response regulator receiver
SCNpilot_cont_1000_p_scaffold_3302_18
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17026..17691
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B2F87
Uncharacterized protein {ECO:0000313|EMBL:KGI76680.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
integral membrane sensor signal transduction histidine kinase
Displaying 18 items

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