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SCNpilot_cont_1000_p_scaffold_3348

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3348_1
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..256
DNA (255bp) protein (85aa)
lspA; lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=509169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain B100).;"
peptidase A8 n=1 Tax=Xanthomonas campestris RepID=UPI0002E96167
SCNpilot_cont_1000_p_scaffold_3348_2
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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316..1266
DNA (951bp) protein (317aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2] rbh
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0T1X8_XANCT rbh
SCNpilot_cont_1000_p_scaffold_3348_3
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1443..4205)
DNA (2763bp) protein (921aa)
TonB-dependent receptor plug n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K2A0_STEMA rbh
TonB-dependent receptor {ECO:0000313|EMBL:EZP46022.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
TonB-dependent receptor plug rbh
SCNpilot_cont_1000_p_scaffold_3348_4
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4214..5191)
DNA (978bp) protein (326aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037B2400 rbh
Putative transmembrane sensor {ECO:0000313|EMBL:EZP46023.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
anti-FecI sigma factor FecR rbh
SCNpilot_cont_1000_p_scaffold_3348_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5188..5817)
DNA (630bp) protein (210aa)
RNA polymerase subunit sigma-24 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036222A5
RNA polymerase sigma factor nccH {ECO:0000313|EMBL:CCP15388.1}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
putative RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_1000_p_scaffold_3348_6
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5966..8872
DNA (2907bp) protein (969aa)
Autotransporter beta-domain protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KZ58_9GAMM rbh
Autotransporter beta-domain protein {ECO:0000313|EMBL:EED39539.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
outer membrane autotransporter barrel domain-containing protein rbh
SCNpilot_cont_1000_p_scaffold_3348_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9153..10193
DNA (1041bp) protein (347aa)
ubiquinol oxidase subunit II; K02297 cytochrome o ubiquinol oxidase subunit II [EC:1.10.3.-] rbh
ubiquinol oxidase subunit II n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037E48E2 rbh
Ubiquinol oxidase, subunit II {ECO:0000313|EMBL:ACF50845.1}; Flags: Precursor;; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
SCNpilot_cont_1000_p_scaffold_3348_8
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10196..11512
DNA (1317bp) protein (439aa)
cytochrome o ubiquinol oxidase subunit I (EC:1.9.3.1); K02298 cytochrome o ubiquinol oxidase subunit I [EC:1.10.3.-]
cytochrome O ubiquinol oxidase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000373FDCD
Cytochrome o ubiquinol oxidase subunit I {ECO:0000313|EMBL:AHY59801.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
Displaying 8 items

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