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SCNpilot_cont_1000_p_scaffold_1360

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1360_1
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

310..531
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GEC0_XANCT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ELQ04260.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
SCNpilot_cont_1000_p_scaffold_1360_2
RBG_13_OP11_40_15_curated, Microgenomates, Bacteria

Not on your lists

comp(647..1303)
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5Y6E9_9BRAD
hypothetical protein
Tax=RBG_13_OP11_40_15_curated
SCNpilot_cont_1000_p_scaffold_1360_3
unknown

Not on your lists

comp(1405..2166)
DNA (762bp) protein (254aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1360_4
unknown

Not on your lists

comp(2281..2943)
DNA (663bp) protein (221aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1360_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3226..3600)
DNA (375bp) protein (125aa)
glutamate dehydrogenase (NADP(+)) (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
glutamate dehydrogenase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E1BCBF
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_cont_1000_p_scaffold_1360_6
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4046..4462)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B475E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA90997.1}; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
SCNpilot_cont_1000_p_scaffold_1360_7
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4513..4746)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI00039B2096
Uncharacterized protein {ECO:0000313|EMBL:CEH38986.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1360_8
unknown

Not on your lists

5383..5559
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1360_9
unknown

Not on your lists

comp(7420..7740)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1360_10
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8034..9377)
DNA (1344bp) protein (448aa)
glutamate dehydrogenase (NADP(+)) (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4] rbh
glutamate dehydrogenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000308654F rbh
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_cont_1000_p_scaffold_1360_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9459..10520)
DNA (1062bp) protein (354aa)
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] rbh
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
3-isopropylmalate dehydrogenase n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FTR8_STRMK rbh
SCNpilot_cont_1000_p_scaffold_1360_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10593..11171)
DNA (579bp) protein (193aa)
3-isopropylmalate dehydratase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] rbh
3-isopropylmalate dehydratase {ECO:0000256|SAAS:SAAS00089872}; EC=4.2.1.33 {ECO:0000256|SAAS:SAAS00089872};; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
3-isopropylmalate dehydratase, small subunit n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K204_STEMA rbh
SCNpilot_cont_1000_p_scaffold_1360_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11171..12589)
DNA (1419bp) protein (473aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
leuC; putative 3-isopropylmalate dehydratase large subunit LeuC (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] rbh
3-isopropylmalate dehydratase large subunit n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5L4W6_STEMA rbh
SCNpilot_cont_1000_p_scaffold_1360_14
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12628..14181)
DNA (1554bp) protein (518aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
leuA; 2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] rbh
2-isopropylmalate synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031DCE22 rbh
SCNpilot_cont_1000_p_scaffold_1360_15
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14178..15275)
DNA (1098bp) protein (366aa)
tdcB; threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] rbh
Strain LMCP11 contig_18, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26595.1}; EC=4.3.1.19 {ECO:0000313|EMBL:KIQ26595.1};; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
Threonine dehydratase catabolic n=3 Tax=Xanthomonas campestris RepID=G0CF47_XANCA rbh
SCNpilot_cont_1000_p_scaffold_1360_16
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15387..15644)
DNA (258bp) protein (86aa)
acetolactate synthase isozyme II small subunit; K11258 acetolactate synthase II small subunit [EC:2.2.1.6]
Acetolactate synthase isozyme II small subunit n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SI65_STRM5
Acetolactate synthase {ECO:0000313|EMBL:AHY57802.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_cont_1000_p_scaffold_1360_17
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15628..17355)
DNA (1728bp) protein (576aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=454957 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. celebensis.;"
ilvG; acetolactate synthase 2 catalytic subunit; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
acetolactate synthase n=1 Tax=Xanthomonas arboricola RepID=UPI0002FF0EF4 rbh
SCNpilot_cont_1000_p_scaffold_1360_18
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17401..18375)
DNA (975bp) protein (325aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
ketol-acid reductoisomerase; K00053 ketol-acid reductoisomerase [EC:1.1.1.86] rbh
ketol-acid reductoisomerase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EF84F4 rbh
SCNpilot_cont_1000_p_scaffold_1360_19
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19204..20022
DNA (819bp) protein (273aa)
Adenylate/guanylate cyclase family protein,putative transcriptional regulator n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YY65_9GAMM
Transcriptional activator domain protein {ECO:0000313|EMBL:BAO30161.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
putative LuxR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_1360_20
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20218..21555)
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Acidovorax avenae RepID=UPI00036D86C5
Uncharacterized protein {ECO:0000313|EMBL:EER60641.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1360_21
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21552..22652)
DNA (1101bp) protein (367aa)
Putative membrane protein n=2 Tax=Bordetella bronchiseptica RepID=Q7WPA7_BORBR
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCN21551.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_cont_1000_p_scaffold_1360_22
unknown

Not on your lists

comp(22649..23419)
DNA (771bp) protein (257aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1360_23
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23359..25764)
DNA (2406bp) protein (802aa)
Putative membrane protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QM64_BORBO
hypothetical protein
Putative N-acetyltransferase YedL {ECO:0000313|EMBL:KDD62302.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
SCNpilot_cont_1000_p_scaffold_1360_24
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25809..26561)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003774178
hypothetical protein
Prepilin-type cleavage/methylation N-terminal domain protein {ECO:0000313|EMBL:KCV60263.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
SCNpilot_cont_1000_p_scaffold_1360_25
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26573..27829)
DNA (1257bp) protein (419aa)
Putative type II secretion system protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QFA6_BORBO rbh
type II secretion system protein rbh
Type II secretion system protein F {ECO:0000313|EMBL:KCV63162.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
SCNpilot_cont_1000_p_scaffold_1360_26
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27826..29532)
DNA (1707bp) protein (569aa)
Putative type II secretion system protein n=1 Tax=Bordetella parapertussis (strain Bpp5) RepID=K0MEB4_BORPB rbh
Type II/IV secretion system protein {ECO:0000313|EMBL:KCV63161.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
type II secretion system protein rbh
SCNpilot_cont_1000_p_scaffold_1360_27
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29519..30961)
DNA (1443bp) protein (481aa)
Putative type II secretion system protein n=1 Tax=Bordetella bronchiseptica (strain MO149) RepID=K0MP29_BORBM rbh
General secretion pathway protein A family protein {ECO:0000313|EMBL:KDD62290.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
type II secretion system protein rbh
SCNpilot_cont_1000_p_scaffold_1360_28
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30958..31863)
DNA (906bp) protein (302aa)
Putative membrane protein n=4 Tax=Bordetella bronchiseptica RepID=Q7WPA2_BORBR
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCN21556.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_cont_1000_p_scaffold_1360_29
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31860..33440)
DNA (1581bp) protein (527aa)
Putative type II secretion system protein n=3 Tax=Bordetella bronchiseptica RepID=K0MRV5_BORBM
type II secretion system protein
Pilus (MSHA type) biogenesis protein MshL {ECO:0000313|EMBL:KDD62295.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
SCNpilot_cont_1000_p_scaffold_1360_30
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33495..34283)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003678A67
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
Displaying items 1-30 of 37 in total

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