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SCNpilot_cont_1000_p_scaffold_5235

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_5235_1
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..791
DNA (789bp) protein (263aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
Elongation factor 4 n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KPT2_STEMA
GTP-binding protein lepA; K03596 GTP-binding protein LepA
SCNpilot_cont_1000_p_scaffold_5235_2
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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835..1653
DNA (819bp) protein (273aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
lepB; Signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] rbh
Signal peptidase I n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z7C8_XANCT rbh
SCNpilot_cont_1000_p_scaffold_5235_3
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1681..2049
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A21B88
Membrane protein {ECO:0000313|EMBL:KGE52836.1}; TaxID=325777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. vasculorum.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_5235_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2054..2716
DNA (663bp) protein (221aa)
ribonuclease 3 (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] rbh
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
Ribonuclease 3 n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYY5_STEMA rbh
SCNpilot_cont_1000_p_scaffold_5235_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2713..3612
DNA (900bp) protein (300aa)
GTPase Era n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KMK4_STEMA rbh
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
GTP-binding protein Era-like-protein; K03595 GTP-binding protein Era rbh
SCNpilot_cont_1000_p_scaffold_5235_6
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3667..4389
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000308CDD7 rbh
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
recO; DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) rbh
SCNpilot_cont_1000_p_scaffold_5235_7
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4414..5130)
DNA (717bp) protein (239aa)
Chemotaxis response regulator protein-glutamate methylesterase n=2 Tax=Stenotrophomonas RepID=M5D2A0_STEMA
Response regulator {ECO:0000313|EMBL:EED38067.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
Response regulator
SCNpilot_cont_1000_p_scaffold_5235_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5207..6592
DNA (1386bp) protein (462aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
23S rRNA (uracil-5-)-methyltransferase RumA; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] rbh
23S rRNA methyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000365455B rbh
SCNpilot_cont_1000_p_scaffold_5235_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6805..7308
DNA (504bp) protein (168aa)
adenylate cyclase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000375071A
CYTH domain protein {ECO:0000313|EMBL:AHY58163.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
adenylate cyclase
SCNpilot_cont_1000_p_scaffold_5235_10
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7335..8030
DNA (696bp) protein (232aa)
polyketide synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F8AE53 rbh
Polyketide synthase {ECO:0000313|EMBL:AHY58164.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
DSBA oxidoreductase rbh
SCNpilot_cont_1000_p_scaffold_5235_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8111..9118
DNA (1008bp) protein (336aa)
beta-hexosaminidase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] rbh
Beta-hexosaminidase {ECO:0000256|HAMAP-Rule:MF_00364, ECO:0000256|SAAS:SAAS00015774}; EC=3.2.1.52 {ECO:0000256|HAMAP-Rule:MF_00364, ECO:0000256|SAAS:SAAS00114579};; Beta-N-acetylhexosaminidase {ECO:0000256|HAMAP-Rule:MF_00364}; N-acetyl-beta-glucosaminidase {ECO:0000256|HAMAP-Rule:MF_00364}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
Beta-hexosaminidase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYX8_STEMA rbh
SCNpilot_cont_1000_p_scaffold_5235_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9118..9669
DNA (552bp) protein (184aa)
hpt; Hypoxanthine-guanine phosphoribosyltransferase (EC:2.4.2.8); K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] rbh
Hypoxanthine phosphoribosyltransferase n=2 Tax=Stenotrophomonas maltophilia RepID=J7VPS4_STEMA rbh
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EJP80299.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
SCNpilot_cont_1000_p_scaffold_5235_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9901..10944
DNA (1044bp) protein (348aa)
5'-methylthioadenosine phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] rbh
Probable S-methyl-5'-thioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.44 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; Purine nucleoside phosphorylase; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
Probable S-methyl-5'-thioinosine phosphorylase n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SRK1_STRM5 rbh
SCNpilot_cont_1000_p_scaffold_5235_14
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11017..12246
DNA (1230bp) protein (410aa)
Oxidoreductase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GAZ2_XANCT rbh
Oxidoreductase {ECO:0000313|EMBL:ELQ02447.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
2-polyprenyl-6-methoxyphenol hydroxylase rbh
SCNpilot_cont_1000_p_scaffold_5235_15
unknown

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12302..12391
DNA (90bp) protein (30aa)

This feature has no annotations

Displaying 15 items

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