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SCNpilot_cont_1000_p_scaffold_4948

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_4948_1
unknown

Not on your lists

comp(2..73)
DNA (72bp) protein (24aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_4948_2
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(127..414)
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H8Q8_CELFA
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEE47066.1}; Flags: Precursor;; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
SCNpilot_cont_1000_p_scaffold_4948_3
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(414..1310)
DNA (897bp) protein (299aa)
Mycothiol S-conjugate amidase {ECO:0000256|HAMAP-Rule:MF_01482}; EC=3.5.1.115 {ECO:0000256|HAMAP-Rule:MF_01482};; Flags: Precursor;; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
Mycothiol S-conjugate amidase Mca n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A7C8_CELGA rbh
mycothiol conjugate amidase Mca rbh
SCNpilot_cont_1000_p_scaffold_4948_4
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1405..1794
DNA (390bp) protein (130aa)
Secretion protein HlyD family protein n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UKN1_CELFN
secretion protein HlyD family protein
Secretion protein HlyD family protein {ECO:0000313|EMBL:ADG73849.1}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
SCNpilot_cont_1000_p_scaffold_4948_5
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1814..2305)
DNA (492bp) protein (164aa)
Transcription elongation factor GreA n=1 Tax=Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) RepID=D1BX81_XYLCX
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00003926}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
GreA/GreB family elongation factor; K03624 transcription elongation factor GreA
SCNpilot_cont_1000_p_scaffold_4948_6
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2451..3284)
DNA (834bp) protein (278aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SJ30_NOCSJ rbh
PhzF family phenazine biosynthesis protein; K06998 rbh
Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:ABL81815.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
SCNpilot_cont_1000_p_scaffold_4948_7
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3294..4496)
DNA (1203bp) protein (401aa)
threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19]
Threonine dehydratase n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UKM9_CELFN
Threonine dehydratase {ECO:0000313|EMBL:ADG73847.1}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
SCNpilot_cont_1000_p_scaffold_4948_8
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4493..5740)
DNA (1248bp) protein (416aa)
Cys/Met metabolism pyridoxal-phosphate-dependent protein n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H8R4_CELFA
Cys/Met metabolism pyridoxal-phosphate-dependent protein
Cys/Met metabolism pyridoxal-phosphate-dependent protein {ECO:0000313|EMBL:AEE47072.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
SCNpilot_cont_1000_p_scaffold_4948_9
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5770..6432
DNA (663bp) protein (221aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UKM6_CELFN
SCNpilot_cont_1000_p_scaffold_4948_10
unknown

Not on your lists

6789..7049
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_4948_11
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7059..7526)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Arthrobacter sp. M2012083 RepID=UPI0003620B82
Uncharacterized protein {ECO:0000313|EMBL:EYR63380.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_4948_12
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7596..8033)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Actinoplanes sp. N902-109 RepID=R4LWL8_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL20069.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
SCNpilot_cont_1000_p_scaffold_4948_13
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8558..9682
DNA (1125bp) protein (375aa)
ATP-dependent DNA ligase I; K01971 DNA ligase (ATP) [EC:6.5.1.1]
Probable DNA ligase {ECO:0000256|HAMAP-Rule:MF_00407}; EC=6.5.1.1 {ECO:0000256|HAMAP-Rule:MF_00407};; Polydeoxyribonucleotide synthase [ATP] {ECO:0000256|HAMAP-Rule:MF_00407}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
Probable DNA ligase n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UKM3_CELFN
SCNpilot_cont_1000_p_scaffold_4948_14
unknown

Not on your lists

10077..10184
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_4948_15
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10344..11174
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI000370C39D
alpha/beta hydrolase fold protein rbh
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ACQ78976.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_cont_1000_p_scaffold_4948_16
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11176..11790
DNA (615bp) protein (205aa)
Regulatory protein TetR n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H8S2_CELFA
regulatory protein TetR
Regulatory protein TetR {ECO:0000313|EMBL:AEE47080.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
SCNpilot_cont_1000_p_scaffold_4948_17
Cellulomonas bogoriensis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11801..12205)
DNA (405bp) protein (135aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1386082 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas bogoriensis 69B4 = DSM 16987.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H8S0_CELFA
FKBP-type peptidylprolyl isomerase
SCNpilot_cont_1000_p_scaffold_4948_18
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12357..13343)
DNA (987bp) protein (329aa)
Cephalosporin-C deacetylase; K01060 cephalosporin-C deacetylase [EC:3.1.1.41]
Cephalosporin-C deacetylase {ECO:0000313|EMBL:AEI11166.1}; EC=3.1.1.41 {ECO:0000313|EMBL:AEI11166.1};; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
Cephalosporin-C deacetylase n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A7A8_CELGA
SCNpilot_cont_1000_p_scaffold_4948_19
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13631..15082)
DNA (1452bp) protein (484aa)
hypothetical protein n=1 Tax=Ruania albidiflava RepID=UPI0003B45931
Uncharacterized protein {ECO:0000313|EMBL:KGM16432.1}; Flags: Fragment;; TaxID=862422 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
HNH endonuclease
Displaying 19 items

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