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SCNpilot_cont_1000_p_scaffold_1735

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1735_1
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3..299
DNA (297bp) protein (99aa)
chlorite dismutase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000382CB81
Hemoprotein HemQ, essential component of heme biosynthetic pathway in Gram-positive bacteria {ECO:0000313|EMBL:EPR75044.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
heme synthetase; K09162 hypothetical protein
SCNpilot_cont_1000_p_scaffold_1735_2
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

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296..1342
DNA (1047bp) protein (349aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
ferrochelatase n=1 Tax=Humibacter albus RepID=UPI0003B4CAD7 rbh
ferrochelatase
SCNpilot_cont_1000_p_scaffold_1735_3
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1339..2262
DNA (924bp) protein (308aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1291006 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter cf. michiganensis LMG 26808.;"
hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
Porphobilinogen deaminase id=7720367 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
SCNpilot_cont_1000_p_scaffold_1735_4
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2259..3227
DNA (969bp) protein (323aa)
Porphobilinogen synthase {ECO:0000313|EMBL:EPR75041.1}; EC=4.2.1.24 {ECO:0000313|EMBL:EPR75041.1};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
hemB; porphobilinogen synthase (EC:4.2.1.24)
delta-aminolevulinic acid dehydratase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000365B167 rbh
SCNpilot_cont_1000_p_scaffold_1735_5
unknown

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3224..3349
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1735_6
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3346..4665
DNA (1320bp) protein (440aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
glutamate-1-semialdehyde aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00035EB02A rbh
SCNpilot_cont_1000_p_scaffold_1735_7
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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4662..5777
DNA (1116bp) protein (372aa)
Contig_37, whole genome shotgun sequence {ECO:0000313|EMBL:KIU02848.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
uroporphyrinogen-III synthase id=7720361 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
uroporphyrinogen-III synthase
SCNpilot_cont_1000_p_scaffold_1735_8
Knoellia flava, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5945..6148
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0DYP8_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KGN33446.1}; TaxID=1385518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia flava TL1.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1735_9
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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6380..7318
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Rhodococcus opacus M213 RepID=K8XKG9_RHOOP
Uncharacterized protein {ECO:0000313|EMBL:EKT81336.1}; TaxID=1129896 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1735_10
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7386..7949)
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5ULP9_CELFN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG76005.1}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
SCNpilot_cont_1000_p_scaffold_1735_11
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7963..8562)
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H2A8_CELFA rbh
recombination protein RecR; K06187 recombination protein RecR rbh
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
SCNpilot_cont_1000_p_scaffold_1735_12
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8625..11261)
DNA (2637bp) protein (879aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:ADG76007.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ADG76007.1};; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
DNA polymerase III, subunits gamma and tau n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5ULQ1_CELFN
SCNpilot_cont_1000_p_scaffold_1735_13
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11659..12186
DNA (528bp) protein (176aa)
NADH dehydrogenase (ubiquinone) 24 kDa subunit (EC:1.6.5.3); K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI00036B6CA5
Tax=RBG_16_Deltaproteobacteria_54_18_curated
SCNpilot_cont_1000_p_scaffold_1735_14
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

12186..15290
DNA (3105bp) protein (1035aa)
NAD-reducing hydrogenase subunit HoxF n=3 Tax=Dehalobacter RepID=T0J939_9FIRM rbh
hymB; putative iron-only hydrogenase, electron-transferring subunit HymB rbh
Tax=BJP_IG2102_BRC1_58_13
SCNpilot_cont_1000_p_scaffold_1735_15
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

15303..17120
DNA (1818bp) protein (606aa)
hymC; putative iron-only hydrogenase, catalytic subunit HymC (EC:1.12.7.2) rbh
Periplasmic [Fe] hydrogenase large subunit n=3 Tax=Dehalobacter RepID=T0I8N0_9FIRM rbh
Tax=BJP_IG2102_BRC1_58_13
SCNpilot_cont_1000_p_scaffold_1735_16
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17322..19349
DNA (2028bp) protein (676aa)
Hydrogenase, Fe-only n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H594_CELFA
Hydrogenase {ECO:0000313|EMBL:KGM12038.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
hydrogenase, Fe-only
Displaying 16 items

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