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SCNpilot_cont_1000_p_scaffold_1854

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1854_1
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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142..567
DNA (426bp) protein (142aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR65309.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
SCNpilot_cont_1000_p_scaffold_1854_2
unknown

Not on your lists

564..1955
DNA (1392bp) protein (464aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1854_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2338..3138)
DNA (801bp) protein (267aa)
Putative IclR family transcriptional regulatory protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M816_RHIL3
IclR family transcriptional regulatory protein
Putative IclR family transcriptional regulatory protein {ECO:0000313|EMBL:CAK10356.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_cont_1000_p_scaffold_1854_4
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3138..4244)
DNA (1107bp) protein (369aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Arthrobacter sp. (strain FB24) RepID=A0JVZ4_ARTS2
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:CDO24342.1}; TaxID=53462 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
periplasmic binding protein/LacI transcriptional regulator; K10439 ribose transport system substrate-binding protein
SCNpilot_cont_1000_p_scaffold_1854_5
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4397..5428
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KCI9_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EQM80738.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
ABC sugar transporter, periplasmic ligand binding protein; K02058 simple sugar transport system substrate-binding protein
SCNpilot_cont_1000_p_scaffold_1854_6
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5428..6945
DNA (1518bp) protein (506aa)
ABC transporter-like protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KNG4_9MICO
Lipase {ECO:0000313|EMBL:KGM16937.1}; TaxID=862422 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
SCNpilot_cont_1000_p_scaffold_1854_7
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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6942..8024
DNA (1083bp) protein (361aa)
Monosaccharide ABC transporter membrane protein, CUT2 family n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLY5_NOCSJ
inner-membrane translocator
Monosaccharide ABC transporter membrane protein, CUT2 family {ECO:0000313|EMBL:ABL82820.1}; Flags: Precursor;; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
SCNpilot_cont_1000_p_scaffold_1854_8
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8021..9115
DNA (1095bp) protein (365aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Actinomyces odontolyticus F0309 RepID=D4TZF7_9ACTO
ABC transporter permease {ECO:0000313|EMBL:KGM16935.1}; TaxID=862422 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
inner-membrane translocator
SCNpilot_cont_1000_p_scaffold_1854_9
Streptomyces sp. Mg1, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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9121..10158
DNA (1038bp) protein (346aa)
Oxidoreductase n=1 Tax=Streptomyces sp. Mg1 RepID=B4VB49_9ACTO
Oxidoreductase {ECO:0000313|EMBL:EDX25186.1}; TaxID=465541 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Mg1.;"
Oxidoreductase domain protein
SCNpilot_cont_1000_p_scaffold_1854_10
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10188..10667
DNA (480bp) protein (160aa)
Putative lactoylglutathione lyase n=1 Tax=Clostridium sp. D5 RepID=F0YT77_9CLOT
Putative lactoylglutathione lyase {ECO:0000313|EMBL:EGB94097.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1854_11
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(10708..11352)
DNA (645bp) protein (215aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349A601
Uncharacterized protein {ECO:0000313|EMBL:EYT60906.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
SCNpilot_cont_1000_p_scaffold_1854_12
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(11349..12326)
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034733BA rbh
Transcriptional regulator {ECO:0000313|EMBL:EYT60499.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
DeoR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_1854_13
Actinomyces turicensis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12464..13519
DNA (1056bp) protein (352aa)
ribose/xylose/arabinose/galactoside ABC transporter permease (EC:3.6.3.17); K10440 ribose transport system permease protein rbh
Uncharacterized protein n=1 Tax=Actinomyces turicensis ACS-279-V-Col4 RepID=K0Z064_9ACTO rbh
Uncharacterized protein {ECO:0000313|EMBL:EJZ85409.1}; TaxID=883077 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces turicensis ACS-279-V-Col4.;"
SCNpilot_cont_1000_p_scaffold_1854_14
Actinotignum schaalii, Actinotignum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13611..14621
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Actinobaculum schaalii FB123-CNA-2 RepID=S2VKG1_9ACTO rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD27286.1}; TaxID=883067 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinotignum.;" source="Actinotignum schaalii FB123-CNA-2.;"
rbsB; ribose ABC transporter ATP-binding protein; K10439 ribose transport system substrate-binding protein rbh
SCNpilot_cont_1000_p_scaffold_1854_15
Actinotignum schaalii, Actinotignum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14623..16194
DNA (1572bp) protein (524aa)
rbsA; ABC transporter ATP-binding protein (EC:3.6.3.17); K10441 ribose transport system ATP-binding protein [EC:3.6.3.17] rbh
Uncharacterized protein n=1 Tax=Actinobaculum schaalii FB123-CNA-2 RepID=S2W3X6_9ACTO rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD27287.1}; TaxID=883067 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinotignum.;" source="Actinotignum schaalii FB123-CNA-2.;"
SCNpilot_cont_1000_p_scaffold_1854_16
Actinotignum schaalii, Actinotignum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16226..16879
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Actinobaculum schaalii FB123-CNA-2 RepID=S2VIK0_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EPD27288.1}; TaxID=883067 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinotignum.;" source="Actinotignum schaalii FB123-CNA-2.;"
putative sugar phosphate isomerase involved in capsule formation
SCNpilot_cont_1000_p_scaffold_1854_17
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16879..18306
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000346DB0F
Xylulose kinase {ECO:0000313|EMBL:EYT60497.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
xylulokinase
SCNpilot_cont_1000_p_scaffold_1854_18
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

18309..18968
DNA (660bp) protein (220aa)
transaldolase; K00616 transaldolase [EC:2.2.1.2]
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=526227 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus; silvanus).;"
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI00037737BB
SCNpilot_cont_1000_p_scaffold_1854_19
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19017..19901)
DNA (885bp) protein (295aa)
Transcriptional antiterminator, BglG n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XAD4_NAKMY
transcriptional antiterminator BglG; K03488 beta-glucoside operon transcriptional antiterminator
Transcriptional antiterminator, BglG {ECO:0000313|EMBL:ACV77299.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_1000_p_scaffold_1854_20
Streptomyces mutabilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19949..21361)
DNA (1413bp) protein (471aa)
glycoside hydrolase family 1; K01188 beta-glucosidase [EC:3.2.1.21] rbh
Glycoside hydrolase family 1 n=2 Tax=Geobacillus RepID=C9RWU5_GEOSY rbh
6-phospho-beta-glucosidase {ECO:0000313|EMBL:KFG72860.1}; TaxID=67332 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mutabilis.;"
SCNpilot_cont_1000_p_scaffold_1854_21
Actinomyces massiliensis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21364..21915)
DNA (552bp) protein (184aa)
PTS system, beta-glucoside-specific, IIABC component {ECO:0000313|EMBL:EJF43954.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EJF43954.1};; TaxID=1125718 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces massiliensis F0489.;"
PTS system beta-glucoside-specific transporter subunit IIABC; K02755 PTS system, beta-glucosides-specific IIA component [EC:2.7.1.69]; K02756 PTS system, beta-glucosides-specific IIB component [EC:2.7.1.69]; K02757 PTS system, beta-glucosides-specific IIC component
PTS system, beta-glucoside-specific, IIABC component n=1 Tax=Actinomyces massiliensis F0489 RepID=J0NAG9_9ACTO
SCNpilot_cont_1000_p_scaffold_1854_22
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21953..23842)
DNA (1890bp) protein (630aa)
2,4-dienoyl-CoA reductase (NADPH) (EC:1.3.1.34) rbh
2,4-dienoyl-CoA reductase (NADPH) {ECO:0000313|EMBL:CCP27274.1}; EC=1.3.1.34 {ECO:0000313|EMBL:CCP27274.1};; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
2,4-dienoyl-CoA reductase (NADPH) n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LSI9_TEPAE rbh
SCNpilot_cont_1000_p_scaffold_1854_23
Lactobacillus paracasei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23904..25349)
DNA (1446bp) protein (482aa)
PTS system beta-glucoside-specific transporter subunit IIBCA; K02755 PTS system, beta-glucosides-specific IIA component [EC:2.7.1.69]; K02756 PTS system, beta-glucosides-specific IIB component [EC:2.7.1.69]; K02757 PTS system, beta-glucosides-specific IIC component
PTS system, beta-glucoside-specific IIBCA components n=3 Tax=Lactobacillus casei group RepID=K6Q7A5_LACCA rbh
PTS system beta-glucoside-specific transporter subunit IIBCA {ECO:0000313|EMBL:EPC87860.1}; TaxID=1256212 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus paracasei subsp. paracasei Lpp43.;"
SCNpilot_cont_1000_p_scaffold_1854_24
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26007..26288
DNA (282bp) protein (94aa)
fruB; phosphotransferase system, phosphocarrier protein HPr (EC:2.7.1.69)
Phosphotransferase system, phosphocarrier protein HPr n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5B8P1_9MICO
Dihydroxyacetone kinase {ECO:0000313|EMBL:EYR64696.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
SCNpilot_cont_1000_p_scaffold_1854_25
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26285..28036
DNA (1752bp) protein (584aa)
phosphoenolpyruvate-protein phosphotransferase; K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9]
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F7ZZZ8_CELGA
SCNpilot_cont_1000_p_scaffold_1854_26
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28086..28952
DNA (867bp) protein (289aa)
Cof hydrolase n=1 Tax=Arthrobacter sp. SJCon RepID=L8TT79_9MICC
Haloacid dehalogenase {ECO:0000313|EMBL:KGM10824.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
HAD-superfamily hydrolase; K07024
SCNpilot_cont_1000_p_scaffold_1854_27
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29239..29673)
DNA (435bp) protein (145aa)
Integrase catalytic region n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A3J5_CELGA
Integrase catalytic region
Integrase catalytic region {ECO:0000313|EMBL:AEI10759.1}; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
Displaying 27 items

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