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SCNpilot_cont_1000_p_scaffold_7173

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_7173_1
delta proteobacterium NaphS2, Deltaproteobacteria, Proteobacteria, Bacteria

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3..209
DNA (207bp) protein (69aa)
Nucleoside transporter, NupC family n=1 Tax=delta proteobacterium NaphS2 RepID=D8F2A9_9DELT
Nucleoside transporter, NupC family {ECO:0000313|EMBL:EFK10096.1}; TaxID=88274 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium NaphS2.;"
Na+ dependent nucleoside transporter domain-containing protein; K03317 concentrative nucleoside transporter, CNT family
SCNpilot_cont_1000_p_scaffold_7173_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(184..1218)
DNA (1035bp) protein (345aa)
Luciferase family protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS13_PARL1 rbh
luciferase family protein rbh
Luciferase family protein {ECO:0000313|EMBL:ABS62696.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_7173_3
unknown

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1264..1827
DNA (564bp) protein (188aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_7173_4
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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1910..3058
DNA (1149bp) protein (383aa)
acyl-CoA dehydrogenase; K06446 acyl-CoA dehydrogenase [EC:1.3.99.-] rbh
PREDICTED: acyl-CoA dehydrogenase family member 9, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1AE71 rbh
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:GAK45220.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_1000_p_scaffold_7173_5
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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3058..3666
DNA (609bp) protein (203aa)
uracil-DNA glycosylase n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039FAA65
Uracil-DNA glycosylase superfamily protein {ECO:0000313|EMBL:GAK45221.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
uracil-DNA glycosylase
SCNpilot_cont_1000_p_scaffold_7173_6
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3690..4427
DNA (738bp) protein (246aa)
Alpha/beta hydrolase fold protein n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T0Y0_META2
alpha/beta hydrolase
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
SCNpilot_cont_1000_p_scaffold_7173_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4442..4690
DNA (249bp) protein (83aa)
Alpha/beta hydrolase fold n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS21_PARL1
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABS62704.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_7173_8
unknown

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4754..4966
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_7173_9
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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5085..6293
DNA (1209bp) protein (403aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z6R9_9NEIS
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EEG07644.1}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein
SCNpilot_cont_1000_p_scaffold_7173_10
GWB2_Desulfobacterales_56_26_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6320..7000
DNA (681bp) protein (227aa)
ABC transporter related id=2096212 bin=GWB2_Desulfobacterales_56_26 species=Shewanella frigidimarina genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
ABC transporter; K02003 putative ABC transport system ATP-binding protein
Tax=GWB2_Desulfobacterales_56_26_curated
SCNpilot_cont_1000_p_scaffold_7173_11
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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6997..8199
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYV6_HALNC rbh
hypothetical protein; K02004 putative ABC transport system permease protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACX95629.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
SCNpilot_cont_1000_p_scaffold_7173_12
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8351..9598
DNA (1248bp) protein (416aa)
PREDICTED: cytochrome P450 55A3-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C14A15 rbh
p450; cytochrome P450 rbh
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_cont_1000_p_scaffold_7173_13
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9704..10558
DNA (855bp) protein (285aa)
acyl-CoA dehydrogenase family protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Acyl-CoA dehydrogenase family protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BZF6_HYPNA
Acyl-CoA dehydrogenase family protein {ECO:0000313|EMBL:KDA00016.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
Displaying 13 items

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