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SCNpilot_cont_1000_p_scaffold_262

Search features with annotation key words

Displaying items 1-30 of 112 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_262_1
Arcobacter nitrofigilis, Arcobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87..1034)
DNA (948bp) protein (316aa)
Tyrosine recombinase XerC n=1 Tax=Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) RepID=D5V5Y9_ARCNC rbh
integrase family protein; K04763 integrase/recombinase XerD rbh
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=572480 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Arcobacter.;" source="Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 /; NCTC 12251 / CI) (Campylobacter nitrofigilis).;"
SCNpilot_cont_1000_p_scaffold_262_2
unknown

Not on your lists

1261..1641
DNA (381bp) protein (127aa)
transposase n=1 Tax=Marinobacterium stanieri RepID=UPI0002557CA3
SCNpilot_cont_1000_p_scaffold_262_3
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1638..2567
DNA (930bp) protein (310aa)
Transposase n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7WPK8_9BACT rbh
Integrase {ECO:0000313|EMBL:EZH73172.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_262_4
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3005..6820
DNA (3816bp) protein (1272aa)
Uncharacterized protein n=1 Tax=Bacteroides nordii CL02T12C05 RepID=I8XVI0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KGO93186.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_262_5
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6833..7639
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IJA3_FLUTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA44973.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_cont_1000_p_scaffold_262_6
Pseudomonas sp. CFII68, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7690..8436
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CFII68 RepID=S6I449_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EPJ97434.1}; TaxID=911243 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CFII68.;"
SCNpilot_cont_1000_p_scaffold_262_7
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8645..9415
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) RepID=Q5LHZ8_BACFN
Contig_15, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22160.1}; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_262_8
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9412..10341)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Aquimarina agarilytica RepID=UPI000287E3F6
Uncharacterized protein {ECO:0000313|EMBL:KGE13711.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_262_9
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10344..13505)
DNA (3162bp) protein (1054aa)
hypothetical protein n=1 Tax=Aquimarina agarilytica RepID=UPI0002896999 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGE13710.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_262_10
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13502..14176)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Aquimarina agarilytica RepID=UPI00028A3467
Uncharacterized protein {ECO:0000313|EMBL:KGE13709.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
SCNpilot_cont_1000_p_scaffold_262_11
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14134..15513)
DNA (1380bp) protein (460aa)
Uncharacterized protein {ECO:0000313|EMBL:KGE13708.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
SCNpilot_cont_1000_p_scaffold_262_12
unknown

Not on your lists

15601..15762
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_262_13
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15893..17380)
DNA (1488bp) protein (496aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI000362416B
putative esterase of the alpha-beta hydrolase superfamily
Putative esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:AGF54117.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
SCNpilot_cont_1000_p_scaffold_262_14
unknown

Not on your lists

comp(17383..17754)
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_262_15
unknown

Not on your lists

18039..18197
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_262_16
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18409..19347)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5BXW0_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC96221.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
glutamyl-or glutaminyl-tRNA synthetase
SCNpilot_cont_1000_p_scaffold_262_17
unknown

Not on your lists

19365..19622
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_262_18

Not on your lists

19696..20400
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035FAB3D
Marine sediment metagenome DNA, contig: S06H3_S14350 {ECO:0000313|EMBL:GAI38522.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_262_19
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

20513..21934
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Cyanothece sp. (strain PCC 8801) RepID=B7K3Y5_CYAP8
hypothetical protein
Tax=RBG_13_Nitrospirae_39_12_curated
SCNpilot_cont_1000_p_scaffold_262_20
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21945..25559)
DNA (3615bp) protein (1205aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI000364AF63 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIZ63128.1}; TaxID=1385664 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_262_21
Cesiribacter andamanensis, Cesiribacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25578..26438)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI00037B4FD7 rbh
ABC transporter ATPase
Putative ABC transporter ATP-binding protein YbhF {ECO:0000313|EMBL:EMR01178.1}; TaxID=1279009 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesiribacter andamanensis AMV16.;"
SCNpilot_cont_1000_p_scaffold_262_22
Weeksella virosa, Weeksella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26517..27821)
DNA (1305bp) protein (435aa)
NADH dehydrogenase (ubiquinone) (EC:1.6.5.3); K03885 NADH dehydrogenase [EC:1.6.99.3] rbh
NADH dehydrogenase (Ubiquinone) {ECO:0000313|EMBL:ADX68758.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ADX68758.1};; TaxID=865938 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Weeksella.;" source="Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC; 16016 / NCTC 11634 / CL345/78).;"
NADH dehydrogenase (Ubiquinone) n=1 Tax=Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) RepID=F0P1W1_WEEVC rbh
SCNpilot_cont_1000_p_scaffold_262_23
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27994..29568)
DNA (1575bp) protein (525aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Ribonuclease Y n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU48_CHIPD
phosphodiesterase; K06950 uncharacterized protein
SCNpilot_cont_1000_p_scaffold_262_24
unknown

Not on your lists

30219..30425
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_262_25
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30452..31597)
DNA (1146bp) protein (382aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
Alanine racemase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JHM3_9BACT rbh
alanine racemase rbh
SCNpilot_cont_1000_p_scaffold_262_26
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31597..32715)
DNA (1119bp) protein (373aa)
Amidohydrolase n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R5K0_OWEHD rbh
Uncharacterized protein {ECO:0000313|EMBL:KGO79947.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
amidohydrolase rbh
SCNpilot_cont_1000_p_scaffold_262_27
unknown

Not on your lists

32836..32961
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_262_28
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


33088..33456
DNA (369bp) protein (123aa)
30S ribosomal protein S10 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU70_CHIPD
30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_262_29
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


33615..34202
DNA (588bp) protein (196aa)
50S ribosomal protein L3 n=1 Tax=Segetibacter koreensis RepID=UPI00035E574B
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_262_30
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


34211..34849
DNA (639bp) protein (213aa)
50S ribosomal protein L4 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PU72_CHIPD
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying items 1-30 of 112 in total

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