ggKbase home page

SCNpilot_cont_1000_p_scaffold_700

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_700_1
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

109..531
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B49054
Response regulator receiver protein {ECO:0000313|EMBL:EHQ30173.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
response regulator receiver
SCNpilot_cont_1000_p_scaffold_700_2
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(550..1392)
DNA (843bp) protein (281aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y9N0_9SPHI rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EHQ30532.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_1000_p_scaffold_700_3
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1483..3663)
DNA (2181bp) protein (727aa)
iron dicitrate transporter n=1 Tax=Cytophagales str. B6 RepID=UPI0003B68B6E rbh
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
TonB-dependent receptor {ECO:0000313|EMBL:ACT94252.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_1000_p_scaffold_700_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3751..4302)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B74428
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99808.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_cont_1000_p_scaffold_700_5
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

4463..5881
DNA (1419bp) protein (473aa)
hypothetical protein id=14425243 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RBG_16_Zixibacteria_53_22_curated
SCNpilot_cont_1000_p_scaffold_700_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5903..6973
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQH3_CHIPD rbh
hypothetical protein; K07027 rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU58862.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_700_7
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7059..8972
DNA (1914bp) protein (638aa)
two-component system-sensor histidine kinase (EC:2.7.13.3)
Putative signal transduction histidine kinase id=3629760 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
Tax=GWA2_Bacteroidetes_31_9_curated
SCNpilot_cont_1000_p_scaffold_700_8
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9219..9917
DNA (699bp) protein (233aa)
Two-component system response regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EFY8_9SPHI rbh
Two-component system response regulator {ECO:0000313|EMBL:EDM35697.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
response regulator receiver; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
SCNpilot_cont_1000_p_scaffold_700_9
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9901..11262
DNA (1362bp) protein (454aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
Two-component system sensor histidine kinase n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GSH8_9SPHI rbh
ATPase rbh
SCNpilot_cont_1000_p_scaffold_700_10
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11282..12940)
DNA (1659bp) protein (553aa)
response regulator receiver modulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VYF9_DYAFD
Response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ACT91638.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_1000_p_scaffold_700_11
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12953..14353)
DNA (1401bp) protein (467aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
Histidine kinase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y3R6_9SPHI
histidine kinase
SCNpilot_cont_1000_p_scaffold_700_12
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14609..15169
DNA (561bp) protein (187aa)
Heme oxygenase n=1 Tax=Pedobacter sp. BAL39 RepID=A6ECB8_9SPHI
Heme oxygenase {ECO:0000313|EMBL:EDM36824.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
heme oxygenase-like protein
SCNpilot_cont_1000_p_scaffold_700_13
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15214..16707)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PTF6_CHIPD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU60946.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_1000_p_scaffold_700_14
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16841..17308
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B32E85
Membrane protein {ECO:0000313|EMBL:EDM38121.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
YiaAB two helix domain-containing protein
SCNpilot_cont_1000_p_scaffold_700_15
unknown

Not on your lists

17482..17712
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_700_16
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18164..19462
DNA (1299bp) protein (433aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YBS1_9SPHI rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ26034.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_700_17
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19542..19973
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Pontibacter sp. BAB1700 RepID=J1FGP5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EJF09434.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_700_18
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19986..20774
DNA (789bp) protein (263aa)
Fe-S oxidoreductase n=1 Tax=Pedobacter arcticus RepID=UPI0002F30A11 rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ26035.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_700_19
unknown

Not on your lists

comp(20776..21345)
DNA (570bp) protein (190aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_700_20
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21342..21734)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B576C6
Uncharacterized protein {ECO:0000313|EMBL:KEQ30092.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
SCNpilot_cont_1000_p_scaffold_700_21
unknown

Not on your lists

21766..21873
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_700_22
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21875..22354
DNA (480bp) protein (160aa)
ABC transporter ATPase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B73E11
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ26037.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_700_23
unknown

Not on your lists

22478..22909
DNA (432bp) protein (144aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_700_24
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23042..23824)
DNA (783bp) protein (261aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-]
peptidoglycan transglycosylase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6C5BC rbh
SCNpilot_cont_1000_p_scaffold_700_25
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(23901..24344)
DNA (444bp) protein (148aa)
50S ribosomal protein L9 n=1 Tax=Cytophagales str. B6 RepID=UPI0003B3B0C7
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
50S ribosomal protein L9; K02939 large subunit ribosomal protein L9
SCNpilot_cont_1000_p_scaffold_700_26
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(24361..24624)
DNA (264bp) protein (88aa)
30S ribosomal protein S18 n=1 Tax=Cytophagales str. B6 RepID=UPI0003B3C117
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
SCNpilot_cont_1000_p_scaffold_700_27
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(24624..24989)
DNA (366bp) protein (122aa)
30S ribosomal protein S6 n=1 Tax=Cytophagales str. B6 RepID=UPI0003B615B9
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
SCNpilot_cont_1000_p_scaffold_700_28
unknown

Not on your lists

25111..25728
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B43271
SCNpilot_cont_1000_p_scaffold_700_29
unknown

Not on your lists

25786..26082
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6FB2F
SCNpilot_cont_1000_p_scaffold_700_30
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26151..28004
DNA (1854bp) protein (618aa)
DNA polymerase III subunits gamma/tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] rbh
DNA polymerase III, subunits gamma and tau n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YBT4_9SPHI rbh
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:EHQ26047.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
Displaying items 1-30 of 45 in total

View Taxonomy