ggKbase home page

SCNpilot_cont_1000_p_scaffold_2799

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2799_1
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

42..461
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000360587B
exbD; biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_2799_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

464..1012
DNA (549bp) protein (183aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
def; N-formylmethionyl-tRNA deformylase; K01462 peptide deformylase [EC:3.5.1.88]
hypothetical protein n=1 Tax=unclassified Verrucomicrobia (miscellaneous) RepID=UPI00036C80E9
SCNpilot_cont_1000_p_scaffold_2799_3
unknown

Not on your lists

1066..2523
DNA (1458bp) protein (486aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2799_4
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

2520..3470
DNA (951bp) protein (317aa)
Glycosyl transferase family 2 n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NHH0_ROSCS
glycosyl transferase family protein
Glycosyl transferase family 2 {ECO:0000313|EMBL:ABU56917.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SCNpilot_cont_1000_p_scaffold_2799_5
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3467..4261
DNA (795bp) protein (265aa)
glycosyl transferase; K00754 [EC:2.4.1.-]
glycosyl transferase n=1 Tax=Glaciibacter superstes RepID=UPI0003B7373D
Putative uncharacterized protein {ECO:0000313|EMBL:CBN56449.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
SCNpilot_cont_1000_p_scaffold_2799_6
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

4263..7406
DNA (3144bp) protein (1048aa)
Dolichyl-phosphate beta-D-mannosyltransferase (EC:2.4.1.83); K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
Glycosyl transferase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AZQ0_9BACT rbh
Glycosyl transferase {ECO:0000313|EMBL:EIQ00492.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
SCNpilot_cont_1000_p_scaffold_2799_7
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

7399..10287
DNA (2889bp) protein (963aa)
Thioredoxin domain-containing protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AZP9_9BACT rbh
Thioredoxin domain-containing protein {ECO:0000313|EMBL:EIQ00491.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2799_8
Fischerella sp. JSC-11, Fischerella, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(10230..13034)
DNA (2805bp) protein (935aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=741277 species="Bacteria; Cyanobacteria; Stigonematales; Fischerella.;" source="Fischerella sp. JSC-11.;"
Glycine dehydrogenase (decarboxylating) n=1 Tax=Fischerella sp. JSC-11 RepID=G6FVF6_9CYAN rbh
glycine dehydrogenase, decarboxylating rbh
Displaying 8 items

View Taxonomy