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SCNpilot_cont_1000_p_scaffold_1236

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1236_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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102..521
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBA2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16290.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1236_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(681..2495)
DNA (1815bp) protein (605aa)
Amino acid permease-associated region n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU69_9BACT rbh
Amino acid permease-associated region {ECO:0000313|EMBL:EDY22107.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_1236_3
Geitlerinema sp. PCC 7407, Geitlerinema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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2640..3992
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9SAW9_9CYAN rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AFY67757.1}; Flags: Precursor;; TaxID=1173025 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Geitlerinema.;" source="Geitlerinema sp. PCC 7407.;"
SCNpilot_cont_1000_p_scaffold_1236_4
Endozoicomonas montiporae, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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4524..5174
DNA (651bp) protein (217aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1027273 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas montiporae.;"
Pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5); K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8REN2_DESPD
SCNpilot_cont_1000_p_scaffold_1236_5
RLO_PLX_64_10, Bacteria

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5220..7235
DNA (2016bp) protein (672aa)
hypothetical protein FdumT_08897 id=4480631 bin=GWC2_Elusimicrobia_64_44 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
SCNpilot_cont_1000_p_scaffold_1236_6
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(7232..8668)
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH95_9BACT rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1236_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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8896..9966
DNA (1071bp) protein (357aa)
Extracellular ligand-binding receptor n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLC1_9BACT rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EEF59324.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
branched-chain amino acid ABC transporter amino acid-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_cont_1000_p_scaffold_1236_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(9967..10956)
DNA (990bp) protein (330aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
Lipid A biosynthesis acyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8M8_9BACT
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:EDY17250.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1236_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(10960..12489)
DNA (1530bp) protein (510aa)
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] rbh
Methionyl-tRNA synthetase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVA7_9BACT rbh
Methionyl-tRNA synthetase {ECO:0000313|EMBL:EDY21920.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1236_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(12583..13353)
DNA (771bp) protein (257aa)
Chorismate dehydratase {ECO:0000256|HAMAP-Rule:MF_00995}; EC=4.2.1.151 {ECO:0000256|HAMAP-Rule:MF_00995};; Menaquinone biosynthetic enzyme MqnA {ECO:0000256|HAMAP-Rule:MF_00995}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWR7_9BACT
hypothetical protein; K07081
SCNpilot_cont_1000_p_scaffold_1236_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(13353..14486)
DNA (1134bp) protein (378aa)
Radical SAM domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWR8_9BACT rbh
Radical SAM domain protein {ECO:0000313|EMBL:EDY21860.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
thiH; thiamine biosynthesis enzyme ThiH or related uncharacterized enzyme rbh
SCNpilot_cont_1000_p_scaffold_1236_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(14590..16977)
DNA (2388bp) protein (796aa)
RNA binding S1 domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC92_9BACT rbh
RNA binding S1 domain protein {ECO:0000313|EMBL:EDY15922.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Tex-like protein; K06959 uncharacterized protein rbh
SCNpilot_cont_1000_p_scaffold_1236_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17406..19781
DNA (2376bp) protein (792aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
phosphoketolase; K01621 phosphoketolase [EC:4.1.2.9] rbh
Probable phosphoketolase n=1 Tax=Rhizobium sp. CF142 RepID=J2APL1_9RHIZ rbh
SCNpilot_cont_1000_p_scaffold_1236_14
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19786..22332
DNA (2547bp) protein (849aa)
plasma-membrane proton-efflux P-type ATPase; K01535 H+-transporting ATPase [EC:3.6.3.6] rbh
Plasma-membrane proton-efflux P-type ATPase n=1 Tax=delta proteobacterium NaphS2 RepID=D8F6H5_9DELT rbh
Uncharacterized protein {ECO:0000313|EMBL:KEO54746.1}; TaxID=1353528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
SCNpilot_cont_1000_p_scaffold_1236_15
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22341..22880)
DNA (540bp) protein (180aa)
chorismate mutase; K04093 chorismate mutase [EC:5.4.99.5]
Chorismate mutase {ECO:0000256|PIRNR:PIRNR026640}; EC=5.4.99.5 {ECO:0000256|PIRNR:PIRNR026640};; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
Chorismate mutase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RZP8_9RALS
SCNpilot_cont_1000_p_scaffold_1236_16
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(22885..24018)
DNA (1134bp) protein (378aa)
Oxidoreductase domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAI1_9BACT rbh
Oxidoreductase {ECO:0000313|EMBL:AKC83290.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
oxidoreductase domain-containing protein rbh
SCNpilot_cont_1000_p_scaffold_1236_17
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(24049..25086)
DNA (1038bp) protein (346aa)
AP endonuclease, family 2 n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQW1_9BACT rbh
AP endonuclease, family 2 {ECO:0000313|EMBL:EDY80980.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
xylose isomerase domain-containing protein rbh
SCNpilot_cont_1000_p_scaffold_1236_18
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

25188..25868
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744BE7
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
Displaying 18 items

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