ggKbase home page

SCNpilot_cont_1000_p_scaffold_1557

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1557_1
unknown

Not on your lists

128..844
DNA (717bp) protein (239aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1557_2
unknown

Not on your lists

841..1146
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1557_3
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(1127..1555)
DNA (429bp) protein (143aa)
Ribonuclease VapC n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8WW16_ACISM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
SCNpilot_cont_1000_p_scaffold_1557_4
unknown

Not on your lists

comp(1552..1803)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1557_5
CG_Proteo_01, Proteobacteria, Bacteria

Not on your lists

2052..3536
DNA (1485bp) protein (495aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. AKL17 RepID=UPI000374FC8F rbh
Fic family protein rbh
Tax=CG_Proteo_01
SCNpilot_cont_1000_p_scaffold_1557_6
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(3600..4445)
DNA (846bp) protein (282aa)
chorismate mutase; K14170 chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
chorismate mutase n=1 Tax=Marinobacterium stanieri RepID=UPI000255A0A6
Tax=GWF2_Verrucomicrobia_62_7_curated
SCNpilot_cont_1000_p_scaffold_1557_7
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(4420..5658)
DNA (1239bp) protein (413aa)
Chromosome segregation and condensation protein, ScpB n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRG8_9BACT
chromosome segregation and condensation protein ScpB; K06024 segregation and condensation protein B
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1557_8
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5655..6419)
DNA (765bp) protein (255aa)
Chromosome segregation and condensation protein ScpA n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7X7_9BACT rbh
condensin subunit ScpA; K05896 segregation and condensation protein A
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1557_9
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(6450..6803)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174494B
Ribosome-associated protein Y (PSrp-1); K05808 putative sigma-54 modulation protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1557_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(6860..7645)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZJ8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20162.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1557_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

7720..8622
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6A8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18017.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
von Willebrand factor type A
SCNpilot_cont_1000_p_scaffold_1557_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

8619..10439
DNA (1821bp) protein (607aa)
von Willebrand factor type A n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6A9_9BACT rbh
von Willebrand factor type A {ECO:0000313|EMBL:EDY18018.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1557_13
unknown

Not on your lists

10527..10961
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1557_14
unknown

Not on your lists

11041..11433
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Acaryochloris sp. CCMEE 5410 RepID=UPI00024850F0
SCNpilot_cont_1000_p_scaffold_1557_15
unknown

Not on your lists

11473..12009
DNA (537bp) protein (179aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1557_16
unknown

Not on your lists

12046..12585
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745B91
SCNpilot_cont_1000_p_scaffold_1557_17
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12767..14002
DNA (1236bp) protein (412aa)
membrane protein n=1 Tax=Pontibacter roseus RepID=UPI000377D6E7 rbh
Membrane protein {ECO:0000313|EMBL:AKD02068.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_1557_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14064..14645
DNA (582bp) protein (194aa)
Ankyrin n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRD3_9BACT
Ankyrin {ECO:0000313|EMBL:EEF57620.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1557_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

14681..15073
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9X6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16730.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1557_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

15151..15537
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9X6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16730.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1557_21
GWF2_Planctomycetes_42_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(15681..16247)
DNA (567bp) protein (189aa)
Putative uncharacterized protein id=3724591 bin=GWF2_Planctomycetes_42_9 species=Shewanella piezotolerans genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
hypothetical protein
Tax=GWF2_Planctomycetes_42_9_curated
SCNpilot_cont_1000_p_scaffold_1557_22
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16368..17045)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Nocardioides sp. CF8 RepID=R7XX06_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EON23869.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1557_23

Not on your lists

comp(17154..17639)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N5K9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKK49640.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_cont_1000_p_scaffold_1557_24
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

17757..18497
DNA (741bp) protein (247aa)
Putative periplasmic protein id=3971781 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
SCNpilot_cont_1000_p_scaffold_1557_25
unknown

Not on your lists

18743..19633
DNA (891bp) protein (297aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1557_26
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20019..21272
DNA (1254bp) protein (418aa)
Sodium/hydrogen exchanger n=2 Tax=Rhodonellum RepID=U5BSC6_9BACT rbh
sodium/hydrogen exchanger
Tax=CG_Delta_01
SCNpilot_cont_1000_p_scaffold_1557_27
unknown

Not on your lists

comp(21269..21445)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1557_28
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(21442..22995)
DNA (1554bp) protein (518aa)
excinuclease ABC subunit C n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017448DF rbh
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C rbh
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1557_29
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(23303..24010)
DNA (708bp) protein (236aa)
ABC transporter related protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IPY9_9BACT rbh
Amino acid ABC transporter ATPase {ECO:0000313|EMBL:AHF93335.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
livF; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF
SCNpilot_cont_1000_p_scaffold_1557_30
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(24007..24777)
DNA (771bp) protein (257aa)
Monosaccharide-transporting ATPase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IPZ0_9BACT rbh
ABC transporter {ECO:0000313|EMBL:AHF93336.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
branched chain amino acid abc transporter; K01995 branched-chain amino acid transport system ATP-binding protein
Displaying items 1-30 of 31 in total

View Taxonomy