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SCNpilot_cont_1000_p_scaffold_1744

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1744_1
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(2..931)
DNA (930bp) protein (310aa)
glutamyl-tRNA reductase (EC:1.2.1.70); K02492 glutamyl-tRNA reductase [EC:1.2.1.70]
Glutamyl-tRNA reductase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN62_9BACT rbh
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1744_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(928..1710)
DNA (783bp) protein (261aa)
Cytochrome c assembly protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5X5_9BACT
Cytochrome c assembly protein {ECO:0000313|EMBL:EDY18178.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ccmC; ABC transporter permease
SCNpilot_cont_1000_p_scaffold_1744_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

1785..2276
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAL6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16534.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
3D domain-containing protein
SCNpilot_cont_1000_p_scaffold_1744_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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2273..2926
DNA (654bp) protein (218aa)
D-alanyl-D-alanine dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671}; Short=D-Ala-D-Ala dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; EC=3.4.13.22 {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Peptidase M15D vanX D-ala-D-ala dipeptidase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0H7_9BACT
peptidase M15D vanX D-ala-D-ala dipeptidase
SCNpilot_cont_1000_p_scaffold_1744_5
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(3131..3550)
DNA (420bp) protein (140aa)
Secondary thiamine-phosphate synthase enzyme n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B3Y6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AHF89324.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1744_6
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

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comp(3597..5009)
DNA (1413bp) protein (471aa)
Uncharacterized protein {ECO:0000313|EMBL:AKC83516.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
Major facilitator superfamily MFS_1 id=4200868 bin=GWC2_Planctomycetes_45_44 species=Opitutaceae bacterium TAV5 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1744_7
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(5006..7003)
DNA (1998bp) protein (666aa)
Uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AW15_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EIP99206.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
SCNpilot_cont_1000_p_scaffold_1744_8
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

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comp(7050..8123)
DNA (1074bp) protein (358aa)
Glycoside hydrolase family protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CW63_9EURY rbh
glycoside hydrolase family protein rbh
Tax=RBG_16_Planctomycetes_64_12_curated
SCNpilot_cont_1000_p_scaffold_1744_9
unknown

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comp(8125..8970)
DNA (846bp) protein (282aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1744_10
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(8998..9639)
DNA (642bp) protein (214aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AVZ9_9BACT
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:EIP99190.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1744_11
unknown

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comp(9688..10635)
DNA (948bp) protein (316aa)
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1744_12
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

10699..11727
DNA (1029bp) protein (343aa)
Transcriptional regulator, LacI family n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IZD9_9BACT
LacI family transcriptional regulator {ECO:0000313|EMBL:AHF90004.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
LacI family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_1744_13
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11782..12741)
DNA (960bp) protein (320aa)
Cadmium, cobalt and zinc/H(+)-K(+) antiporter CzcD n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5DHG3_9GAMM rbh
Cadmium, cobalt and zinc/H(+)-K(+) antiporter CzcD {ECO:0000313|EMBL:ESS66866.1}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
cation diffusion facilitator family transporter; K03295 cation efflux system protein, CDF family rbh
SCNpilot_cont_1000_p_scaffold_1744_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

12853..13722
DNA (870bp) protein (290aa)
cdsA; phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
Phosphatidate cytidylyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7P6_9BACT
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:EDY17536.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1744_15
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

13719..14822
DNA (1104bp) protein (368aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1262691 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkerma
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] rbh
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746326 rbh
SCNpilot_cont_1000_p_scaffold_1744_16
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14883..15290
DNA (408bp) protein (136aa)
Large-conductance mechanosensitive channel n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=MSCL_HYPNA
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1121915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
mscL; large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel
SCNpilot_cont_1000_p_scaffold_1744_17
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15409..16800
DNA (1392bp) protein (464aa)
membrane-associated Zn-dependent protease; K11749 regulator of sigma E protease [EC:3.4.24.-] rbh
Predicted membrane-associated Zn-dependent protease n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0JZ69_9BACT rbh
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1744_18
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

16797..18563
DNA (1767bp) protein (589aa)
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] rbh
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745ED2 rbh
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1744_19
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19052..19312)
DNA (261bp) protein (87aa)
ABC transporter-like protein; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
ABC transporter-related protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0R5_9BACT
Tax=CG_Rhodof_03
Displaying 19 items

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