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SCNpilot_cont_1000_p_scaffold_1937

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1937_1
Trichodesmium erythraeum, Trichodesmium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(3..953)
DNA (951bp) protein (317aa)
glycogen debranching protein GlgX; K02438 glycogen operon protein GlgX [EC:3.2.1.-]
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=203124 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Trichodesmium.;" source="Trichodesmium erythraeum (strain IMS101).;"
Glycogen debranching enzyme GlgX n=1 Tax=Trichodesmium erythraeum (strain IMS101) RepID=Q10UZ6_TRIEI
SCNpilot_cont_1000_p_scaffold_1937_2
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

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comp(1027..2076)
DNA (1050bp) protein (350aa)
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
SCNpilot_cont_1000_p_scaffold_1937_3
uncultured Aquifex sp., Aquifex, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

2171..3088
DNA (918bp) protein (306aa)
lipopolysaccharide heptosyltransferase III; K02849 heptosyltransferase III [EC:2.4.-.-]
Glyco_transf_9 {ECO:0000313|EMBL:AIA92643.1}; Flags: Fragment;; TaxID=522376 species="Bacteria; Aquificae; Aquificales; Aquificaceae; Aquifex; environmental samples.;" source="uncultured Aquifex sp.;"
Lipopolysaccharide heptosyltransferase III, putative id=2431079 bin=GWC2_Deltaproteobacteria_55_46 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
SCNpilot_cont_1000_p_scaffold_1937_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(3201..4133)
DNA (933bp) protein (311aa)
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EEF63205.1}; EC=2.7.9.1 {ECO:0000313|EMBL:EEF63205.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pyruvate phosphate dikinase (EC:2.7.9.1); K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1]
Pyruvate, phosphate dikinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9Q7_9BACT
SCNpilot_cont_1000_p_scaffold_1937_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(4091..5914)
DNA (1824bp) protein (608aa)
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EEF63205.1}; EC=2.7.9.1 {ECO:0000313|EMBL:EEF63205.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pyruvate phosphate dikinase (EC:2.7.9.1); K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1]
Pyruvate, phosphate dikinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9Q7_9BACT
SCNpilot_cont_1000_p_scaffold_1937_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(6051..6248)
DNA (198bp) protein (66aa)
PUR-alpha/beta/gamma DNA/RNA-binding n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6M3_9BACT
PUR-alpha/beta/gamma DNA/RNA-binding {ECO:0000313|EMBL:EDY17824.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
PurA family ssDNA and RNA-binding protein
SCNpilot_cont_1000_p_scaffold_1937_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(6352..8454)
DNA (2103bp) protein (701aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
VacB/RNase II family 3'-5' exoribonuclease (EC:3.1.13.1); K12573 ribonuclease R [EC:3.1.-.-] rbh
Ribonuclease R n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6L0_9BACT rbh
SCNpilot_cont_1000_p_scaffold_1937_8
unknown

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8565..9104
DNA (540bp) protein (180aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1937_9
GWF2_Lentisphaerae_38_69_curated, Lentisphaerae, Bacteria

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9126..9698
DNA (573bp) protein (191aa)
Putative uncharacterized protein id=4289597 bin=GWF2_Lentisphaerae_38_69 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
signal peptide
Tax=GWF2_Lentisphaerae_38_69_curated
SCNpilot_cont_1000_p_scaffold_1937_10
unknown

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comp(10271..10672)
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1937_11
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11007..11507
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-133-C04 RepID=UPI0003822F99
Uncharacterized protein {ECO:0000313|EMBL:KFN50039.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
SCNpilot_cont_1000_p_scaffold_1937_12
CG_Mariprof_02, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11513..12184
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Desulfobacter curvatus RepID=UPI0003816399
suppressor of sigma54-dependent transcription
Tax=CG_Mariprof_02
SCNpilot_cont_1000_p_scaffold_1937_13
CG_Mariprof_02, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12181..12861
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1E140_9GAMM
yqiJ; inner membrane protein YqiJ
Tax=CG_Mariprof_02
SCNpilot_cont_1000_p_scaffold_1937_14
CG_Proteo_01, Proteobacteria, Bacteria

Not on your lists

12898..14652
DNA (1755bp) protein (585aa)
hypothetical protein n=1 Tax=Desulfobacter curvatus RepID=UPI000371DA34 rbh
yqiK; inner membrane protein YqiK rbh
Tax=CG_Proteo_01
SCNpilot_cont_1000_p_scaffold_1937_15
unknown

Not on your lists

14906..17062
DNA (2157bp) protein (719aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1937_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(17084..17776)
DNA (693bp) protein (231aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAL1_9BACT rbh
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EDY16529.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
two component signal transduction response regulator
SCNpilot_cont_1000_p_scaffold_1937_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(17773..19653)
DNA (1881bp) protein (627aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG92_9BACT rbh
two component sensor histidine kinase
SCNpilot_cont_1000_p_scaffold_1937_18
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(19664..20977)
DNA (1314bp) protein (438aa)
von Willebrand factor A n=1 Tax=Desulfospira joergensenii RepID=UPI0003B7859D
von Willebrand factor A; K07114 uncharacterized protein
Tax=GWF2_Lentisphaerae_44_16_curated
SCNpilot_cont_1000_p_scaffold_1937_19
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21066..21665
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RS96_ACCPU
Uncharacterized protein {ECO:0000313|EMBL:KFB72437.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
hypothetical protein
Displaying 19 items

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