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SCNPILOT_CONT_1000_P_Eukaryote_58_88

SCNPILOT_CONT_1000_P_unknown_58_88
In projects: SCNPILOT_CONT_1000_P

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_cont_1000_p_UNK

Properties

Avg. coverage: 87.56 Longest contig: 140.52 Kbp Bin length: 5.17 Mbp GC content: 57.55 %
Contigs count: 352 Features count: 6636 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 7 / 55 MC: 2 BSCG 2 / 51 MC: 1 ASCG 4 / 38 MC: 1

Description

from TS-ESOM (probably missing many smaller pieces)

Displaying items 1-50 of 352 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
SCNpilot_cont_1000_p_scaffold_421 193 140522 bp 60.45 83.05 83.09
SCNpilot_cont_1000_p_scaffold_623 188 134174 bp 58.88 83.90 78.03
SCNpilot_cont_1000_p_scaffold_274 182 113940 bp 59.03 84.15 74.62
SCNpilot_cont_1000_p_scaffold_725 180 116380 bp 59.44 84.27 74.44
SCNpilot_cont_1000_p_scaffold_526 117 86437 bp 59.06 84.12 81.21
SCNpilot_cont_1000_p_scaffold_1266 115 77458 bp 57.33 81.88 79.55
SCNpilot_cont_1000_p_scaffold_962 115 81723 bp 57.42 84.76 72.88
SCNpilot_cont_1000_p_scaffold_848 89 50661 bp 56.31 81.50 67.73
SCNpilot_cont_1000_p_scaffold_860 85 63780 bp 59.29 84.89 65.80
SCNpilot_cont_1000_p_scaffold_1264 84 54676 bp 55.72 80.57 68.55
SCNpilot_cont_1000_p_scaffold_645 83 47163 bp 56.76 83.72 75.56
SCNpilot_cont_1000_p_scaffold_1319 82 50291 bp 56.90 84.02 75.72
SCNpilot_cont_1000_p_scaffold_1279 74 45780 bp 55.95 83.99 73.17
SCNpilot_cont_1000_p_scaffold_1794 73 50551 bp 58.88 84.01 76.91
SCNpilot_cont_1000_p_scaffold_1071 69 47182 bp 58.71 80.72 76.15
SCNpilot_cont_1000_p_scaffold_1065 68 42076 bp 55.25 81.97 68.80
SCNpilot_cont_1000_p_scaffold_933 65 63315 bp 60.48 86.03 67.52
SCNpilot_cont_1000_p_scaffold_1554 65 36629 bp 57.06 84.01 76.19
SCNpilot_cont_1000_p_scaffold_1677 60 44667 bp 57.88 83.47 70.75
SCNpilot_cont_1000_p_scaffold_1162 59 40938 bp 57.18 88.22 61.69
SCNpilot_cont_1000_p_scaffold_1077 58 41102 bp 54.68 85.41 67.41
SCNpilot_cont_1000_p_scaffold_683 56 45135 bp 58.83 83.89 67.25
SCNpilot_cont_1000_p_scaffold_2422 55 43573 bp 55.22 84.78 73.67
SCNpilot_cont_1000_p_scaffold_1801 53 28271 bp 57.07 83.16 70.33
SCNpilot_cont_1000_p_scaffold_1018 51 31226 bp 59.48 81.73 79.41
SCNpilot_cont_1000_p_scaffold_1861 50 35310 bp 56.18 84.15 62.35
SCNpilot_cont_1000_p_scaffold_1095 50 33438 bp 60.11 82.62 80.28
SCNpilot_cont_1000_p_scaffold_1150 50 29957 bp 56.03 87.63 69.35
SCNpilot_cont_1000_p_scaffold_1663 50 34623 bp 54.28 85.38 69.85
SCNpilot_cont_1000_p_scaffold_1465 50 59508 bp 59.39 84.18 72.48
SCNpilot_cont_1000_p_scaffold_3252 49 26547 bp 56.84 85.84 72.84
SCNpilot_cont_1000_p_scaffold_1064 48 31704 bp 56.86 83.83 74.47
SCNpilot_cont_1000_p_scaffold_1712 48 28454 bp 57.26 83.63 69.10
SCNpilot_cont_1000_p_scaffold_991 46 31782 bp 59.79 82.56 81.59
SCNpilot_cont_1000_p_scaffold_1156 46 27412 bp 57.53 83.60 66.93
SCNpilot_cont_1000_p_scaffold_2703 45 24569 bp 55.42 86.82 68.82
SCNpilot_cont_1000_p_scaffold_574 42 52891 bp 60.16 82.74 72.76
SCNpilot_cont_1000_p_scaffold_1284 41 26035 bp 57.26 80.34 82.33
SCNpilot_cont_1000_p_scaffold_1693 41 31825 bp 57.74 79.84 70.13
SCNpilot_cont_1000_p_scaffold_3740 40 20187 bp 56.55 81.74 74.13
SCNpilot_cont_1000_p_scaffold_1558 39 22760 bp 59.35 81.47 75.75
SCNpilot_cont_1000_p_scaffold_2015 39 25966 bp 59.21 82.66 74.64
SCNpilot_cont_1000_p_scaffold_3408 39 29759 bp 58.06 82.34 70.92
SCNpilot_cont_1000_p_scaffold_3084 38 31519 bp 59.72 84.40 57.50
SCNpilot_cont_1000_p_scaffold_1628 38 23131 bp 55.06 83.83 63.89
SCNpilot_cont_1000_p_scaffold_1043 37 32912 bp 60.78 85.69 58.00
SCNpilot_cont_1000_p_scaffold_5143 35 18113 bp 55.21 81.74 71.98
SCNpilot_cont_1000_p_scaffold_1173 35 27067 bp 59.18 79.76 69.80
SCNpilot_cont_1000_p_scaffold_1563 34 26286 bp 57.94 84.36 81.88
SCNpilot_cont_1000_p_scaffold_1148 34 31646 bp 57.15 91.75 80.82
Displaying items 1-50 of 352 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.