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SCNpilot_cont_1000_p_scaffold_920

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_920_1
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..306
DNA (306bp) protein (102aa)
transmembrane cytochrome oxidase subunit II; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-]
Cytochrome d terminal oxidase polypeptide subunit II id=2495496 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Tax=GWF1_Xanthomonadales_69_6_curated
SCNpilot_cont_1000_p_scaffold_920_2
unknown

Not on your lists

316..414
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_920_3
unknown

Not on your lists

comp(422..625)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_920_4
unknown

Not on your lists

comp(630..839)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_920_5
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(984..1751)
DNA (768bp) protein (256aa)
Short-chain dehydrogenase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HRJ1_AZOC5
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:GAK46134.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
short-chain dehydrogenase
SCNpilot_cont_1000_p_scaffold_920_6
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1809..2726)
DNA (918bp) protein (306aa)
Cation diffusion facilitator family transporter n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K8X7_NITWC rbh
cation diffusion facilitator family transporter; K13283 ferrous-iron efflux pump FieF rbh
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
SCNpilot_cont_1000_p_scaffold_920_7
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2723..3370)
DNA (648bp) protein (216aa)
pdxH; pyridoxamine 5'-phosphate oxidase; K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z5I0_AZOL4
SCNpilot_cont_1000_p_scaffold_920_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3587..4186
DNA (600bp) protein (200aa)
Sel1 domain protein repeat-containing protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR78_PARL1
Sel1 domain-containing protein
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:ABS62411.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_920_9

Not on your lists

4276..5211
DNA (936bp) protein (312aa)
molecular chaperone DnaJ n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003691CA6
Chaperone DnaJ {ECO:0000313|EMBL:AHN97596.1}; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
putative heat shock protein DnaJ
SCNpilot_cont_1000_p_scaffold_920_10

Not on your lists

5356..6141
DNA (786bp) protein (262aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
enoyl-ACP reductase; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SNW0_9RHOB
SCNpilot_cont_1000_p_scaffold_920_11
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6131..6736
DNA (606bp) protein (202aa)
gpmB; putative phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Fructose-2,6-bisphosphatase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3HYP0_9BRAD
Fructose-2,6-bisphosphatase {ECO:0000313|EMBL:EJN09896.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
SCNpilot_cont_1000_p_scaffold_920_12

Not on your lists

6889..7989
DNA (1101bp) protein (367aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5]
chorismate synthase n=1 Tax=Methyloferula stellata RepID=UPI000378459E
SCNpilot_cont_1000_p_scaffold_920_13
unknown

Not on your lists

comp(8438..8749)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_920_14
unknown

Not on your lists

comp(8928..9329)
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_920_15
unknown

Not on your lists

comp(9363..9779)
DNA (417bp) protein (139aa)
hypothetical protein
SCNpilot_cont_1000_p_scaffold_920_16
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9963..10397
DNA (435bp) protein (145aa)
Rrf2 family transcriptional regulator n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B6ABD0
Uncharacterized protein {ECO:0000313|EMBL:AHE55843.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
BadM/Rrf2 family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_920_17
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10771..11502)
DNA (732bp) protein (244aa)
Peptidase C13, legumain asparaginyl peptidase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T4W1_CAUSK
peptidase C13, legumain asparaginyl peptidase
Peptidase C13, legumain asparaginyl peptidase {ECO:0000313|EMBL:ABZ72488.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_920_18
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11502..12557)
DNA (1056bp) protein (352aa)
putative RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
23S rRNA (Uracil-5-)-methyltransferase rumA n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V2C7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EZP49061.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_cont_1000_p_scaffold_920_19
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12639..14573)
DNA (1935bp) protein (645aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RVX2_9BRAD
SCNpilot_cont_1000_p_scaffold_920_20

Not on your lists

comp(14614..14895)
DNA (282bp) protein (94aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
exodeoxyribonuclease VII small subunit n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A8FD74
SCNpilot_cont_1000_p_scaffold_920_21

Not on your lists

comp(15038..16819)
DNA (1782bp) protein (594aa)
sppA; signal peptide peptidase SppA; K04773 protease IV [EC:3.4.21.-]
Signal peptide peptidase SppA n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1Q6C1_BREDI rbh
Signal peptide peptidase SppA {ECO:0000313|EMBL:AHN97614.1}; TaxID=1447233 species="Bacteria; environmental samples.;" source="uncultured bacterium 12AC_lac13.;"
SCNpilot_cont_1000_p_scaffold_920_22
bacterium YEK0313, Bacteria

Not on your lists

comp(16930..17112)
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003707288
Uncharacterized protein {ECO:0000313|EMBL:CEJ12908.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_920_23
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17260..17739
DNA (480bp) protein (160aa)
methionine sulfoxide reductase B n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0002E0BAB8
Peptide methionine sulfoxide reductase MsrB {ECO:0000313|EMBL:EKZ96532.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
methionine-R-sulfoxide reductase
SCNpilot_cont_1000_p_scaffold_920_24
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17792..18397)
DNA (606bp) protein (202aa)
Invasion associated locus B family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HIV0_9RHIZ
Invasion associated locus B family protein {ECO:0000313|EMBL:EHK59331.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_cont_1000_p_scaffold_920_25
Halomonas salina, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18394..18972)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Halomonas smyrnensis RepID=UPI00030512C3
Invasion associated locus B {ECO:0000313|EMBL:KGE77394.1}; TaxID=42565 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas salina.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_920_26
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19157..19831)
DNA (675bp) protein (225aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BCP7_9RHIZ
peptide methionine sulfoxide reductase
SCNpilot_cont_1000_p_scaffold_920_27
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19893..21146)
DNA (1254bp) protein (418aa)
adenosylmethionine-8-amino-7-oxononanoate aminotransferase; K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJG3_XANP2
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:ABS68156.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_1000_p_scaffold_920_28
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21146..21754)
DNA (609bp) protein (203aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
bioD; dithiobiotin synthetase; K01935 dethiobiotin synthetase [EC:6.3.3.3]
dithiobiotin synthetase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000369B0F5
SCNpilot_cont_1000_p_scaffold_920_29
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21751..22878)
DNA (1128bp) protein (376aa)
8-amino-7-oxononanoate synthase; K00652 8-amino-7-oxononanoate synthase [EC:2.3.1.47] rbh
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:ABS68154.1}; EC=2.3.1.47 {ECO:0000313|EMBL:ABS68154.1};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F53E0C rbh
SCNpilot_cont_1000_p_scaffold_920_30
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22927..23787)
DNA (861bp) protein (287aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
purine nucleoside phosphorylase I; K03783 purine-nucleoside phosphorylase [EC:2.4.2.1]
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI00037AEF20
Displaying items 1-30 of 38 in total

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