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SCNpilot_cont_1000_p_scaffold_3890

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3890_1
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..961)
DNA (960bp) protein (320aa)
Double-strand break repair protein AddB n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKT5_9RHIZ
Double-strand break repair protein AddB {ECO:0000313|EMBL:EHK58783.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
double-strand break repair protein AddB
SCNpilot_cont_1000_p_scaffold_3890_2
unknown

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comp(961..1695)
DNA (735bp) protein (245aa)
mannose-1-phosphate guanylyltransferase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B678AB
Mannose-1-phosphate guanylyltransferase {ECO:0000313|EMBL:CPR18526.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Nucleotidyl transferase superfamily
SCNpilot_cont_1000_p_scaffold_3890_3
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1696..2817)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003B3F975 rbh
aminoglycoside phosphotransferase rbh
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_cont_1000_p_scaffold_3890_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2810..3352)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPC4_PARL1
hypothetical protein; K06925 UPF0079 ATP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:ABS61757.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_3890_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3391..4626
DNA (1236bp) protein (412aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00529 ferredoxin--NAD+ reductase [EC:1.18.1.3]
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPB7_PARL1
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ABS61750.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_3890_6
unknown

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4919..5029
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3890_7
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5137..7614)
DNA (2478bp) protein (826aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPA8_PARL1
PAS/PAC sensor signal transduction histidine kinase
SCNpilot_cont_1000_p_scaffold_3890_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7888..9294)
DNA (1407bp) protein (469aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
S-adenosyl-L-homocysteine hydrolase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000300B9CF rbh
SCNpilot_cont_1000_p_scaffold_3890_9
Hyphomonas sp. BRH_c22, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9551..10429)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R8X6_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:KJS39306.1}; TaxID=1629710 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. BRH_c22.;"
hypothetical protein; K09973 hypothetical protein
SCNpilot_cont_1000_p_scaffold_3890_10
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10511..10777)
DNA (267bp) protein (89aa)
HPr kinase n=1 Tax=alpha proteobacterium L41A RepID=UPI000382B99C
Serine kinase {ECO:0000313|EMBL:KIC60852.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
phosphotransferase system, phosphocarrier protein HPr; K11189 phosphocarrier protein
SCNpilot_cont_1000_p_scaffold_3890_11
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10803..11198)
DNA (396bp) protein (132aa)
PTS system fructose subfamily transporter subunit IIA; K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]
PTS fructose transporter subunit IIA n=1 Tax=Sphingomonas RepID=UPI00028A1D22
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_1000_p_scaffold_3890_12
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11285..11746)
DNA (462bp) protein (154aa)
aldolase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3F55B
Aldolase {ECO:0000313|EMBL:KJR66069.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
hprK; HPr kinase
SCNpilot_cont_1000_p_scaffold_3890_13
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11743..13317)
DNA (1575bp) protein (525aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
integral membrane sensor signal transduction histidine kinase; K14980 two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPA2_PARL1
SCNpilot_cont_1000_p_scaffold_3890_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13324..14025)
DNA (702bp) protein (234aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPA1_PARL1
two component transcriptional regulator; K14981 two-component system, OmpR family, response regulator ChvI
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABS61734.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_3890_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14256..15065
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PPA0_RHIE6
Uncharacterized protein {ECO:0000313|EMBL:KEC74764.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
hypothetical protein
Displaying 15 items

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