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SCNpilot_cont_1000_p_scaffold_1168

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1168_1
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36..3251)
DNA (3216bp) protein (1072aa)
RND transporter n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037B366D
Putative transporter {ECO:0000313|EMBL:GAM02276.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
acriflavin resistance protein
SCNpilot_cont_1000_p_scaffold_1168_2
unknown

Not on your lists

comp(3327..3803)
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1168_3
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3999..4868
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J711_HYPSM
Uncharacterized protein {ECO:0000313|EMBL:BAP88515.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1168_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5146..5490
DNA (345bp) protein (115aa)
Peptidase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAQ2_9BRAD
Peptidase propeptide and YPEB domain protein {ECO:0000313|EMBL:CEG09827.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
peptidase
SCNpilot_cont_1000_p_scaffold_1168_5
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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5487..6152
DNA (666bp) protein (222aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YH03_THIV6
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AFL76271.1}; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
SCNpilot_cont_1000_p_scaffold_1168_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6149..7519
DNA (1371bp) protein (457aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00036B6E1C rbh
signal transduction histidine kinase rbh
SCNpilot_cont_1000_p_scaffold_1168_7
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7512..8552
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036E379F
Probable Co/Zn/Cd efflux system membrane fusion protein {ECO:0000313|EMBL:BAQ17346.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
RND family efflux transporter MFP subunit
SCNpilot_cont_1000_p_scaffold_1168_8
unknown

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8555..11632
DNA (3078bp) protein (1026aa)
cytochrome C peroxidase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037F5277 rbh
CzcA family heavy metal efflux pump {ECO:0000313|EMBL:CPR17776.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Heavy metal efflux pump CzcA rbh
SCNpilot_cont_1000_p_scaffold_1168_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11629..11934
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCT7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB47850.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1168_10
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11931..13187
DNA (1257bp) protein (419aa)
Transporter n=2 Tax=Sphingomonadaceae RepID=T0HL16_9SPHN
Putative heavy metal efflux system protein {ECO:0000313|EMBL:KEQ55618.1}; Flags: Precursor;; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
outer membrane efflux protein
SCNpilot_cont_1000_p_scaffold_1168_11
unknown

Not on your lists

13434..13628
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1168_12
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13692..14378
DNA (687bp) protein (229aa)
XRE family transcriptional regulator n=1 Tax=Aureimonas ureilytica RepID=UPI00035EA300
winged helix family two component transcriptional regulator
Winged helix family two component transcriptional regulator {ECO:0000313|EMBL:AGK59510.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_1000_p_scaffold_1168_13
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14347..15714
DNA (1368bp) protein (456aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
Signal transduction histidine kinase n=1 Tax=Caulobacter crescentus OR37 RepID=R0EPZ1_CAUCE rbh
signal transduction histidine kinase
SCNpilot_cont_1000_p_scaffold_1168_14
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15828..16289
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4QRR0_9CAUL
redoxin domain-containing protein
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
SCNpilot_cont_1000_p_scaffold_1168_15
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16291..16512
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Psychromonas ossibalaenae RepID=UPI000378964E
Uncharacterized protein {ECO:0000313|EMBL:KGJ95814.1}; Flags: Precursor;; TaxID=1535422 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassotalea.;" source="Thalassotalea sp. ND16A.;"
putative lipoprotein
SCNpilot_cont_1000_p_scaffold_1168_16
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16503..17930
DNA (1428bp) protein (476aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4PB06_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:ESQ85236.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1168_17
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17956..18858
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4P167_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:ESQ81886.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein rbh
SCNpilot_cont_1000_p_scaffold_1168_18
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18914..21208)
DNA (2295bp) protein (765aa)
actP; copper-transporting P-type ATPase (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Copper-transporting P-type ATPase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J5I4_9SPHN
Copper-transporting P-type ATPase {ECO:0000313|EMBL:EQB33216.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCNpilot_cont_1000_p_scaffold_1168_19
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21238..21513
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IEV0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF82185.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1168_20
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21600..21917
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRW4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHX13988.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1168_21
Asaia platycodi, Asaia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21973..23703
DNA (1731bp) protein (577aa)
copper-resistance protein CopA n=3 Tax=Acetobacter aceti RepID=UPI00036E2A76 rbh
Multicopper oxidase {ECO:0000313|EMBL:CDG39802.1}; TaxID=1382230 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Asaia.;" source="Asaia platycodi SF2.1.;"
copA; copper resistance protein A rbh
SCNpilot_cont_1000_p_scaffold_1168_22
Asaia platycodi, Asaia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23700..24449
DNA (750bp) protein (250aa)
Copper resistance protein CopB n=1 Tax=Asaia sp. SF2.1 RepID=V8A9A0_9PROT
Copper resistance protein B {ECO:0000313|EMBL:CDG40367.1}; TaxID=1382230 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Asaia.;" source="Asaia platycodi SF2.1.;"
putative copper resistance protein B; K07233 copper resistance protein B
SCNpilot_cont_1000_p_scaffold_1168_23
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24743..25612
DNA (870bp) protein (290aa)
Spermidine/putrescine ABC transporter permease n=1 Tax=Oceanibaculum indicum P24 RepID=K2JPB6_9PROT rbh
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:EKE76397.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
spermidine/putrescine ABC transporter permease; K02054 putative spermidine/putrescine transport system permease protein
SCNpilot_cont_1000_p_scaffold_1168_24
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25626..26417
DNA (792bp) protein (264aa)
Spermidine/putrescine ABC transporter permease n=1 Tax=Oceanibaculum indicum P24 RepID=K2J0G1_9PROT rbh
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:EKE76396.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
spermidine/putrescine ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_cont_1000_p_scaffold_1168_25
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26428..27345
DNA (918bp) protein (306aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Spermidine/putrescine ABC transporter ATPase n=1 Tax=Oceanibaculum indicum P24 RepID=K2KGD1_9PROT
potG; spermidine/putrescine ABC transporter ATP-binding protein; K11076 putrescine transport system ATP-binding protein
SCNpilot_cont_1000_p_scaffold_1168_26
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27407..28558
DNA (1152bp) protein (384aa)
D-mannonate dehydratase (EC:4.2.1.8); K01686 mannonate dehydratase [EC:4.2.1.8]
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035FA73D
Tax=GWA2_Bacteroidetes_40_15_curated
SCNpilot_cont_1000_p_scaffold_1168_27
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28555..31254)
DNA (2700bp) protein (900aa)
(glutamate--ammonia-ligase) adenylyltransferase; K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42]
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / D
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRN6_PARL1
Displaying 27 items

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