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SCNpilot_cont_1000_p_scaffold_1269

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1269_1
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..2374
DNA (2373bp) protein (791aa)
ABC transporter, permease protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y3U8_9PROT
ABC transporter, permease protein {ECO:0000313|EMBL:EGX99812.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
putative ABC transporter permease
SCNpilot_cont_1000_p_scaffold_1269_2
unknown

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2411..2806
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1269_3
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2907..3629)
DNA (723bp) protein (241aa)
cytochrome C n=1 Tax=alpha proteobacterium L41A RepID=UPI0003648BC1
Cytochrome C {ECO:0000313|EMBL:KIC60934.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
cytochrome c class I; K08738 cytochrome c
SCNpilot_cont_1000_p_scaffold_1269_4
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3944..4672
DNA (729bp) protein (243aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|SAAS:SAAS00089008};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
3-deoxy-manno-octulosonate cytidylyltransferase; K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] rbh
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K620_9PROT rbh
SCNpilot_cont_1000_p_scaffold_1269_5
unknown

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4691..4813
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1269_6
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4813..5670
DNA (858bp) protein (286aa)
Prephenate dehydratase {ECO:0000313|EMBL:BAQ16217.1}; EC=4.2.1.51 {ECO:0000313|EMBL:BAQ16217.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Prephenate dehydratase (EC:4.2.1.51); K04518 prephenate dehydratase [EC:4.2.1.51]
Prephenate dehydratase n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PUS7_KRIFD
SCNpilot_cont_1000_p_scaffold_1269_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6043..6996)
DNA (954bp) protein (318aa)
NUDIX hydrolase; K03426 NAD+ diphosphatase [EC:3.6.1.22]
NUDIX hydrolase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPP4_PARL1
NUDIX hydrolase {ECO:0000313|EMBL:ABS61877.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1269_8
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7336..9042
DNA (1707bp) protein (569aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
DNA-directed DNA polymerase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TY23_9PROT rbh
DNA-directed DNA polymerase {ECO:0000313|EMBL:CAM75530.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
SCNpilot_cont_1000_p_scaffold_1269_9
Hyphomonas sp. T16B2, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9042..9635
DNA (594bp) protein (198aa)
recombinase RecR n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A31B6C
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1280941 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. T16B2.;"
recR; recombination protein RecR; K06187 recombination protein RecR
SCNpilot_cont_1000_p_scaffold_1269_10
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9660..13040)
DNA (3381bp) protein (1127aa)
TonB-dependent receptor n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QKU8_BRESC
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ADL01762.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_cont_1000_p_scaffold_1269_11
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13117..14070)
DNA (954bp) protein (318aa)
anti-FecI sigma factor FecR n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488E75
FecR iron sensor protein {ECO:0000313|EMBL:KGB53906.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
fecR; putative transmembrane sensor FecR
SCNpilot_cont_1000_p_scaffold_1269_12
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14070..14552)
DNA (483bp) protein (161aa)
Sigma-24 subunit, ECF subfamily n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y2X5_9PROT
ECF subfamily RNA polymerase sigma-70 factor {ECO:0000313|EMBL:KGB53905.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
ECF subfamily RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_1000_p_scaffold_1269_13
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14917..16143
DNA (1227bp) protein (409aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocys
6-phosphofructokinase n=1 Tax=Methylocystis parvus RepID=UPI0002DE5A80 rbh
phosphofructokinase rbh
SCNpilot_cont_1000_p_scaffold_1269_14
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16578..19481
DNA (2904bp) protein (968aa)
TonB-denpendent receptor n=1 Tax=Sphingobium sp. HDIP04 RepID=T0H8A6_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:AJR23587.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
TonB-dependent receptor-like protein
SCNpilot_cont_1000_p_scaffold_1269_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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19710..20606
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC630
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
SCNpilot_cont_1000_p_scaffold_1269_16
unknown

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20632..21567
DNA (936bp) protein (312aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1269_17
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21641..22462)
DNA (822bp) protein (274aa)
Putative HTH-type transcriptional regulator YagI n=1 Tax=Streptomyces aurantiacus JA 4570 RepID=S3ZPE5_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KCZ54610.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
transcriptional regulator IclR
SCNpilot_cont_1000_p_scaffold_1269_18
Hyphomonas atlantica, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22492..23529)
DNA (1038bp) protein (346aa)
4-hydroxy-2-oxovalerate aldolase {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546}; Short=HOA {ECO:0000256|HAMAP-Rule:MF_01656};; EC=4.1.3.39 {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546};; 4-hydroxy-2-keto-pentanoic acid aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; 4-hydroxy-2-oxopentanoate aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; TaxID=1280948 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas atlan
4-hyroxy-2-oxovalerate aldolase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037664B5
4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase
SCNpilot_cont_1000_p_scaffold_1269_19
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23532..24485)
DNA (954bp) protein (318aa)
Acetaldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042164}; EC=1.2.1.10 {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042125};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000256|HAMAP-Rule:MF_01657}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
acetaldehyde dehydrogenase (EC:1.2.1.10); K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
Acetaldehyde dehydrogenase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HLA1_9SPHN rbh
SCNpilot_cont_1000_p_scaffold_1269_20
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24777..25361
DNA (585bp) protein (195aa)
Response regulator receiver and ANTAR domain-containing protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VT60_9GAMM
response regulator receiver and ANTAR domain-containing protein; K07183 response regulator NasT
Response regulator receiver and ANTAR domain protein {ECO:0000313|EMBL:ACK52650.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_1000_p_scaffold_1269_21
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25358..26515
DNA (1158bp) protein (386aa)
Nitrate transporter, putative n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EJF9_METSB rbh
nitrate transporter; K02049 NitT/TauT family transport system ATP-binding protein rbh
Nitrate transporter, putative {ECO:0000313|EMBL:ACK52651.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_1000_p_scaffold_1269_22
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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26785..27990
DNA (1206bp) protein (402aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VT58_9GAMM rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:EIL90399.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
narK; nitrate transporter; K02575 MFS transporter, NNP family, nitrate/nitrite transporter rbh
SCNpilot_cont_1000_p_scaffold_1269_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28003..30465
DNA (2463bp) protein (821aa)
Assimilatory nitrite reductase (NAD(P)H) large subunit {ECO:0000313|EMBL:ABE63729.1}; EC=1.7.1.4 {ECO:0000313|EMBL:ABE63729.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
nitrite reductase (NAD(P)H) large subunit, NirB; K00362 nitrite reductase (NAD(P)H) large subunit [EC:1.7.1.4] rbh
Assimilatory nitrite reductase (NAD(P)H) large subunit n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJ68_NITHX rbh
SCNpilot_cont_1000_p_scaffold_1269_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30469..30810
DNA (342bp) protein (114aa)
nitrite reductase (NAD(P)H) large subunit, NirD; K00363 nitrite reductase (NAD(P)H) small subunit [EC:1.7.1.4]
Assimilatory nitrite reductase (NAD(P)H) small subunit {ECO:0000313|EMBL:ABE63728.1}; EC=1.7.1.4 {ECO:0000313|EMBL:ABE63728.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Assimilatory nitrite reductase (NAD(P)H) small subunit n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJ69_NITHX
SCNpilot_cont_1000_p_scaffold_1269_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30807..31022
DNA (216bp) protein (72aa)
nasA; nitrate reductase; K00372 nitrate reductase catalytic subunit [EC:1.7.99.4]
Molybdopterin oxidoreductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VT55_9GAMM
Molybdopterin oxidoreductase {ECO:0000313|EMBL:EIL90396.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Displaying 25 items

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