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SCNpilot_cont_1000_p_scaffold_1471

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1471_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..626)
DNA (624bp) protein (208aa)
phospholipid N-methyltransferase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000381200C
ribosomal RNA adenine methylase transferase
Ribosomal RNA adenine methylase transferase {ECO:0000313|EMBL:ADU41934.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_1000_p_scaffold_1471_2
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(701..1849)
DNA (1149bp) protein (383aa)
Chaperone protein DnaJ n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DIQ4_BRAJP
dnaJ; chaperone protein DnaJ; K03686 molecular chaperone DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_cont_1000_p_scaffold_1471_3
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1987..3909)
DNA (1923bp) protein (641aa)
molecular chaperone DnaK n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031E1B2C
Chaperone protein DnaK {ECO:0000255|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000255|HAMAP-Rule:MF_00332}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
dnaK; molecular chaperone DnaK; K04043 molecular chaperone DnaK
SCNpilot_cont_1000_p_scaffold_1471_4
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4086..4571)
DNA (486bp) protein (162aa)
TspO and MBR like protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T379_CAUSK
TspO and MBR-like protein; K07185 tryptophan-rich sensory protein
TspO and MBR like protein {ECO:0000313|EMBL:ABZ69314.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_1471_5
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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4645..6396
DNA (1752bp) protein (584aa)
hypothetical protein n=1 Tax=Xanthomonas arboricola RepID=UPI0002E0C2A8
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_cont_1000_p_scaffold_1471_6
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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6487..7707
DNA (1221bp) protein (407aa)
Glycosyl hydrolase, BNR repeat protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RVL1_ACCPU rbh
glycosyl hydrolase, BNR repeat-containing protein rbh
Tax=RBG_16_Gamma2_60_9_curated
SCNpilot_cont_1000_p_scaffold_1471_7
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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7716..7973
DNA (258bp) protein (86aa)
ThiamineS protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RVL0_ACCPU
sulfur transfer protein ThiS
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_cont_1000_p_scaffold_1471_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7978..9390)
DNA (1413bp) protein (471aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5K1_9GAMM
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:EIL94742.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
SCNpilot_cont_1000_p_scaffold_1471_9
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9393..11648)
DNA (2256bp) protein (752aa)
Malic enzyme {ECO:0000313|EMBL:ERP87341.1}; EC=1.1.1.40 {ECO:0000313|EMBL:ERP87341.1};; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
phosphate acetyl/butyryl transferase subfamily protein; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
Malic enzyme n=2 Tax=Labrenzia RepID=U7FSN0_9RHOB
SCNpilot_cont_1000_p_scaffold_1471_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11846..14467
DNA (2622bp) protein (874aa)
DNA mismatch repair protein MutS n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=MUTS_PARL1
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
DNA mismatch repair protein MutS {ECO:0000255|HAMAP-Rule:MF_00096}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_1471_11
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14517..14993
DNA (477bp) protein (159aa)
UspA domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ75_PARL1
UspA domain-containing protein {ECO:0000313|EMBL:GAK43796.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
UspA domain-containing protein
SCNpilot_cont_1000_p_scaffold_1471_12
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15155..15346
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UF41_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:GAM98584.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1471_13
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15501..16898
DNA (1398bp) protein (466aa)
leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] rbh
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NXA1_AZOS1 rbh
SCNpilot_cont_1000_p_scaffold_1471_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16900..19128)
DNA (2229bp) protein (743aa)
primosome assembly protein PriA; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] rbh
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Primosomal protein N n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HT47_PARL1 rbh
SCNpilot_cont_1000_p_scaffold_1471_15
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19204..19860
DNA (657bp) protein (219aa)
transaldolase; K00616 transaldolase [EC:2.2.1.2]
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
Probable transaldolase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I4Z7_RHOVT
SCNpilot_cont_1000_p_scaffold_1471_16
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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19860..20768
DNA (909bp) protein (303aa)
Tyrosine recombinase XerC n=1 Tax=Rhodovulum sp. PH10 RepID=J6JCE2_9RHOB
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
xerC; site-specific tyrosine recombinase XerC; K03733 integrase/recombinase XerC
SCNpilot_cont_1000_p_scaffold_1471_17
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

20840..22096
DNA (1257bp) protein (419aa)
Glucose/sorbosone dehydrogenase n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZK23_TERRK rbh
glucose/sorbosone dehydrogenase rbh
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:AFL89591.1}; Flags: Precursor;; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
Displaying 17 items

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