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SCNpilot_cont_1000_p_scaffold_1994

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1994_1
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1003)
DNA (1002bp) protein (334aa)
dcp; peptidyl-dipeptidase dcp (EC:3.4.15.5); K01284 peptidyl-dipeptidase Dcp [EC:3.4.15.5]
Peptidyl-dipeptidase dcp n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IP71_RHOCS
Peptidase M3 {ECO:0000313|EMBL:KFL32688.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_cont_1000_p_scaffold_1994_2
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1023..1730)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SQX0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD96597.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
hypothetical protein; K09807 hypothetical protein
SCNpilot_cont_1000_p_scaffold_1994_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2058..2777)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344DA41
Two component transcriptional regulator OmpR {ECO:0000313|EMBL:GAN78496.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
transcriptional regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_cont_1000_p_scaffold_1994_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2971..3279
DNA (309bp) protein (103aa)
Uncharacterized protein {ECO:0000313|EMBL:KIZ39102.1}; Flags: Fragment;; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_1000_p_scaffold_1994_5
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3726..4475
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SW89_CAUSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ70086.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_1994_6
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4524..5108)
DNA (585bp) protein (195aa)
Outer membrane protein/peptidoglycan-associated lipoprotein n=1 Tax=Caulobacter crescentus OR37 RepID=R0CX78_CAUCE
Outer membrane protein/peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:ENZ81101.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
OmpA/MotB domain-containing protein
SCNpilot_cont_1000_p_scaffold_1994_7
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5836..7503
DNA (1668bp) protein (556aa)
Glycoside hydrolase family protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y0A3_9PROT rbh
Glycoside hydrolase family protein {ECO:0000313|EMBL:EGY01047.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
beta-xylosidase
SCNpilot_cont_1000_p_scaffold_1994_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7595..8821
DNA (1227bp) protein (409aa)
galactonate dehydratase (EC:4.2.1.6); K01684 galactonate dehydratase [EC:4.2.1.6]
Galactonate dehydratase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHV1_9SPHN
Galactonate dehydratase {ECO:0000313|EMBL:GAD47780.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_cont_1000_p_scaffold_1994_9
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8818..10047
DNA (1230bp) protein (410aa)
MFS transporter n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000346FD6E
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACL57724.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_1000_p_scaffold_1994_10
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10034..11275
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A452_STAND rbh
hypothetical protein; K09123 hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADH87872.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_1000_p_scaffold_1994_11
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11275..11682
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A451_STAND
hypothetical protein; K09128 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH87871.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_1000_p_scaffold_1994_12
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11682..12446
DNA (765bp) protein (255aa)
hydroxypyruvate isomerase; K01816 hydroxypyruvate isomerase [EC:5.3.1.22]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000368B7A9
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_cont_1000_p_scaffold_1994_13
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12443..13708)
DNA (1266bp) protein (422aa)
Major facilitator superfamily (MFS_1) transporter n=1 Tax=Burkholderia sp. (strain 383) RepID=Q396Z0_BURS3 rbh
major facilitator transporter; K08194 MFS transporter, ACS family, D-galactonate transporter rbh
Major Facilitator Superfamily protein {ECO:0000313|EMBL:AIO28516.1}; TaxID=983594 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia ATCC 25416.;"
SCNpilot_cont_1000_p_scaffold_1994_14
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13762..14814)
DNA (1053bp) protein (351aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=985078 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CF2.;"
uxuA; mannonate dehydratase (EC:4.2.1.8); K01686 mannonate dehydratase [EC:4.2.1.8] rbh
Mannonate dehydratase n=1 Tax=Burkholderia multivorans ATCC BAA-247 RepID=J4QJR1_9BURK rbh
SCNpilot_cont_1000_p_scaffold_1994_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14843..16132)
DNA (1290bp) protein (430aa)
mandelate racemase/muconate lactonizing protein; K12661 L-rhamnonate dehydratase [EC:4.2.1.90] rbh
L-rhamnonate dehydratase {ECO:0000256|HAMAP-Rule:MF_01288}; Short=RhamD {ECO:0000256|HAMAP-Rule:MF_01288};; EC=4.2.1.90 {ECO:0000256|HAMAP-Rule:MF_01288};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
L-rhamnonate dehydratase n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI0003825646 rbh
SCNpilot_cont_1000_p_scaffold_1994_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16142..17011)
DNA (870bp) protein (290aa)
polyphosphate:nucleotide phosphotransferase n=1 Tax=Methyloferula stellata RepID=UPI00035C1073 rbh
Phosphate:nucleotide phosphotransferase {ECO:0000313|EMBL:KIZ40245.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_1994_17
unknown

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comp(17026..17208)
DNA (183bp) protein (61aa)

This feature has no annotations

Displaying 17 items

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