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SCNpilot_cont_1000_p_scaffold_4880_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_4880_curated_1
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..790)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EB8B72
Sugar kinase {ECO:0000313|EMBL:EDP62170.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
putative carbohydrate/purine kinase
SCNpilot_cont_1000_p_scaffold_4880_curated_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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841..1512
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ31_PARL1
hypothetical protein; K06203 CysZ protein
Uncharacterized protein {ECO:0000313|EMBL:ABS65164.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_4880_curated_3
unknown

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1509..1892
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_4880_curated_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1870..2559)
DNA (690bp) protein (230aa)
endonuclease III; K10773 endonuclease III [EC:4.2.99.18]
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Endonuclease III n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ33_PARL1
SCNpilot_cont_1000_p_scaffold_4880_curated_5
Brucella sp. NVSL 07-0026, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2552..3361)
DNA (810bp) protein (270aa)
dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=520448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. NVSL 07-0026.;"
dihydrodipicolinate reductase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002ECC74B
SCNpilot_cont_1000_p_scaffold_4880_curated_6
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3396..3896)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037C288A
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
GrpE protein HSP-70 cofactor; K03687 molecular chaperone GrpE
SCNpilot_cont_1000_p_scaffold_4880_curated_7
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3928..5088)
DNA (1161bp) protein (387aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZSZ6_9PROT
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_1000_p_scaffold_4880_curated_8
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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5090..5833
DNA (744bp) protein (248aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
rph; ribonuclease PH; K00989 ribonuclease PH [EC:2.7.7.56]
Ribonuclease PH n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RNPH_PARL1 rbh
SCNpilot_cont_1000_p_scaffold_4880_curated_9
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

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5830..6447
DNA (618bp) protein (206aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium J
Non-canonical purine NTP pyrophosphatase n=1 Tax=alpha proteobacterium JLT2015 RepID=M2SC94_9PROT
diTP/XTP pyrophosphatase
SCNpilot_cont_1000_p_scaffold_4880_curated_10
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6547..7683
DNA (1137bp) protein (379aa)
putative oxygen-independent coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:ABS67779.1}; EC=1.3.99.22 {ECO:0000313|EMBL:ABS67779.1};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IID6_XANP2
SCNpilot_cont_1000_p_scaffold_4880_curated_11
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7700..8944)
DNA (1245bp) protein (415aa)
Putative branched-chain amino acid ABC transporter, periplasmic component n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AGF3_AZOBR
Extracellular ligand-binding receptor {ECO:0000313|EMBL:CDO59818.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
extracellular ligand-binding receptor
SCNpilot_cont_1000_p_scaffold_4880_curated_12
Hyphomonas sp. L-53-1-40, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9881..10246
DNA (366bp) protein (122aa)
UPF0102 protein BAL199_11231 n=1 Tax=alpha proteobacterium BAL199 RepID=A8U078_9PROT
UPF0102 protein L53_02215 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1207058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. L-53-1-40.;"
hypothetical protein; K07460 putative endonuclease
SCNpilot_cont_1000_p_scaffold_4880_curated_13
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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10278..11219
DNA (942bp) protein (314aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162, ECO:0000313|EMBL:CDO59823.1}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162, ECO:0000313|EMBL:CDO59823.1};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
gshB; glutathione synthetase; K01920 glutathione synthase [EC:6.3.2.3]
Glutathione synthetase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3ACE1_9PROT
SCNpilot_cont_1000_p_scaffold_4880_curated_14

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11263..11937
DNA (675bp) protein (225aa)
Pirin-related protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNC2_SINAD
Pirin-like protein
Pirin {ECO:0000313|EMBL:AIA11757.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 14 items

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