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SCNpilot_cont_1000_p_scaffold_3031_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3031_curated_1
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..489
DNA (489bp) protein (163aa)
Secretion protein HlyD n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FFJ8_9RHIZ
Secretion protein HlyD {ECO:0000313|EMBL:ESX71640.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
putative secretion protein HlyD; K02005 HlyD family secretion protein
SCNpilot_cont_1000_p_scaffold_3031_curated_2
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(559..3711)
DNA (3153bp) protein (1051aa)
TonB-dependent receptor n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y0A6_9PROT
TonB-dependent receptor {ECO:0000313|EMBL:EGY01050.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
TonB-dependent receptor
SCNpilot_cont_1000_p_scaffold_3031_curated_3
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3802..4851)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2YS39_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:GAD58266.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
anti-FecI sigma factor FecR
SCNpilot_cont_1000_p_scaffold_3031_curated_4
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4851..5393)
DNA (543bp) protein (181aa)
Sigma factor, ECF subfamily n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2Z9X9_9CAUL
Sigma factor, ECF subfamily {ECO:0000313|EMBL:GAD58265.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_1000_p_scaffold_3031_curated_5
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5697..8729
DNA (3033bp) protein (1011aa)
TonB-dependent receptor n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y0A6_9PROT
TonB-dependent receptor {ECO:0000313|EMBL:EGY01050.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
TonB-dependent receptor-like protein
SCNpilot_cont_1000_p_scaffold_3031_curated_6
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8815..10359
DNA (1545bp) protein (515aa)
Tryptophan halogenase n=1 Tax=Caulobacter sp. AP07 RepID=J2Q9U9_9CAUL
Tryptophan halogenase {ECO:0000313|EMBL:EJL36847.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
tryptophan halogenase
SCNpilot_cont_1000_p_scaffold_3031_curated_7
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10373..11083
DNA (711bp) protein (237aa)
multidrug transporter n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI00036B7E0C
SapC family protein
SapC family protein {ECO:0000313|EMBL:ABZ71535.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_3031_curated_8
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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11080..12078
DNA (999bp) protein (333aa)
transcription factor jumonji jmjC domain-containing protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289A4B3
Uncharacterized protein {ECO:0000313|EMBL:EGY01052.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3031_curated_9
unknown

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comp(12075..12179)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 9 items

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