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SCNpilot_cont_1000_p_scaffold_5450_curated

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_5450_curated_1
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1779
DNA (1779bp) protein (593aa)
Squalene-hopene cyclase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZUF2_9PROT
Squalene-hopene cyclase {ECO:0000313|EMBL:EHM03396.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
squalene-hopene cyclase
SCNpilot_cont_1000_p_scaffold_5450_curated_2
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1964..2659
DNA (696bp) protein (232aa)
phosphorylase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000289C14B
Hopanoid-associated phosphorylase {ECO:0000313|EMBL:EHM03395.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hopanoid-associated phosphorylase
SCNpilot_cont_1000_p_scaffold_5450_curated_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2606..3751)
DNA (1146bp) protein (382aa)
radical SAM protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA105
Molybdenum cofactor biosynthesis protein moaA {ECO:0000313|EMBL:GAO55497.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Fe-S oxidoreductase
SCNpilot_cont_1000_p_scaffold_5450_curated_4
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3757..4680)
DNA (924bp) protein (308aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I0A0_RHOVT
SCNpilot_cont_1000_p_scaffold_5450_curated_5
Acetobacter tropicalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4991..5929
DNA (939bp) protein (313aa)
Octaprenyl-diphosphate synthase {ECO:0000313|EMBL:KGB26530.1}; EC=2.5.1.- {ECO:0000313|EMBL:KGB26530.1};; EC=2.5.1.1 {ECO:0000313|EMBL:KGB26530.1};; EC=2.5.1.10 {ECO:0000313|EMBL:KGB26530.1};; EC=2.5.1.29 {ECO:0000313|EMBL:KGB26530.1};; TaxID=104102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter tropicalis.;"
geranylgeranyl pyrophosphate synthase; K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
Geranylgeranyl pyrophosphate synthase n=1 Tax=Acetobacter tropicalis NBRC 101654 RepID=F7VE36_9PROT
SCNpilot_cont_1000_p_scaffold_5450_curated_6
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6014..6682
DNA (669bp) protein (223aa)
Hopanoid biosynthesis associated membrane protein HpnM n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0003050332
Hopanoid biosynthesis associated membrane protein HpnM {ECO:0000313|EMBL:EGD59490.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Hopanoid biosynthesis associated membrane protein HpnM
SCNpilot_cont_1000_p_scaffold_5450_curated_7
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6945..7718)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003094874
hopanoid biosynthesis associated RND transporter like protein HpnN; K07003
Hopanoid biosynthesis associated RND transporter like protein HpnN {ECO:0000313|EMBL:ACK52153.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
Displaying 7 items

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