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SCNpilot_cont_1000_p_scaffold_3751_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3751_curated_1
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..470)
DNA (468bp) protein (156aa)
TadE-like protein n=1 Tax=Caulobacter sp. AP07 RepID=J2PDE0_9CAUL
Pilus assembly protein TadE {ECO:0000313|EMBL:AJR25047.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_cont_1000_p_scaffold_3751_curated_2
unknown

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comp(475..984)
DNA (510bp) protein (170aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3751_curated_3
Thioclava pacifica, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(995..2620)
DNA (1626bp) protein (542aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI000370FE2F
Uncharacterized protein {ECO:0000313|EMBL:KEO51498.1}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava pacifica DSM 10166.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3751_curated_4
unknown

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comp(2635..2976)
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3751_curated_5
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2973..4370)
DNA (1398bp) protein (466aa)
Type II/IV secretion system secretin RcpA/CpaC n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GRU9_9PROT
Type II/IV secretion system secretin RcpA/CpaC {ECO:0000313|EMBL:EKV28660.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
type II and III secretion system protein; K02280 pilus assembly protein CpaC
SCNpilot_cont_1000_p_scaffold_3751_curated_6
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4382..5194)
DNA (813bp) protein (271aa)
Flp pilus assembly protein RcpC/CpaB n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GVD9_9PROT
Flp pilus assembly protein RcpC/CpaB {ECO:0000313|EMBL:EKV28659.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
Flp pilus assembly protein CpaB; K02279 pilus assembly protein CpaB
SCNpilot_cont_1000_p_scaffold_3751_curated_7
unknown

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comp(5365..5607)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3751_curated_8
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6591..7532)
DNA (942bp) protein (314aa)
Subtilisin-like serine protease n=1 Tax=Caulobacter sp. AP07 RepID=J2HQ01_9CAUL
Subtilisin-like serine protease {ECO:0000313|EMBL:EJL37923.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
peptidase S8/S53 subtilisin kexin sedolisin
SCNpilot_cont_1000_p_scaffold_3751_curated_9
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7588..8670
DNA (1083bp) protein (361aa)
UPI0003D6798C related cluster n=1 Tax=unknown RepID=UPI0003D6798C
RNA polymerase sigma70 {ECO:0000313|EMBL:ETI64525.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
ECF subfamily RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_1000_p_scaffold_3751_curated_10
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8672..9382
DNA (711bp) protein (237aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas oryzae pv. oryzicola BLS256 RepID=G7TLX8_9XANT
Putative transmembrane transcriptional regulator (Anti-sigma factor) {ECO:0000313|EMBL:KFC68316.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3751_curated_11
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9536..10297
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI00037D3ECE
Uncharacterized protein {ECO:0000313|EMBL:EGK72166.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
hypothetical protein
Displaying 11 items

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