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SCNpilot_cont_1000_p_scaffold_2993_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2993_curated_1
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..539
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AG93_AZOBR
Alanine racemase {ECO:0000313|EMBL:AIB13073.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
conserved protein of unknown function; putative PLP-binding barrel domain
SCNpilot_cont_1000_p_scaffold_2993_curated_2
Paenirhodobacter enshiensis, Paenirhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(536..1039)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IVI2_RHOCS
Uncharacterized protein {ECO:0000313|EMBL:KFI27510.1}; TaxID=1105367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paenirhodobacter.;" source="Paenirhodobacter enshiensis.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2993_curated_3
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1057..1653)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z7M8_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS85482.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_cont_1000_p_scaffold_2993_curated_4
Actibacterium mucosum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1800..2447
DNA (648bp) protein (216aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SM90_9RHOB
Transcriptional regulator {ECO:0000313|EMBL:KAJ57469.1}; TaxID=1454373 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium mucosum KCTC 23349.;"
two component transcriptional regulator
SCNpilot_cont_1000_p_scaffold_2993_curated_5
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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2503..4515
DNA (2013bp) protein (671aa)
Putative penicillin-binding transpeptidase/transglycosylase protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IYF5_POLGS
pbpC; penicillin-binding transpeptidase/transglycosylase
Putative penicillin-binding transpeptidase/transglycosylase protein {ECO:0000313|EMBL:ADZ68468.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_1000_p_scaffold_2993_curated_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4640..5560)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP00_PARL1
hypothetical protein; K07043
Uncharacterized protein {ECO:0000313|EMBL:ABS61633.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_2993_curated_7
unknown

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5639..6061
DNA (423bp) protein (141aa)
disulfide bond formation protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B44C31
SCNpilot_cont_1000_p_scaffold_2993_curated_8
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6058..6612
DNA (555bp) protein (185aa)
ubiquinone biosynthesis protein COQ7; K06134 ubiquinone biosynthesis monooxygenase Coq7 [EC:1.14.13.-]
Ubiquinone biosynthesis protein COQ7 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R8C7_PHEZH
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_cont_1000_p_scaffold_2993_curated_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6739..7299)
DNA (561bp) protein (187aa)
HNH endonuclease n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8R4_STAND
HNH endonuclease
HNH endonuclease {ECO:0000313|EMBL:ADH90598.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_1000_p_scaffold_2993_curated_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7379..8086)
DNA (708bp) protein (236aa)
Phospholipase/Carboxylesterase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTL8_PARL1
phospholipase/carboxylesterase; K06999 phospholipase/carboxylesterase
Phospholipase/Carboxylesterase {ECO:0000313|EMBL:ABS63251.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_2993_curated_11
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8117..8944
DNA (828bp) protein (276aa)
glutamyl- and glutaminyl-tRNA synthetase; K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
Glutamyl-and glutaminyl-tRNA synthetase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AA71_9PROT
Glutamyl-and glutaminyl-tRNA synthetase {ECO:0000313|EMBL:BAE53116.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_cont_1000_p_scaffold_2993_curated_12
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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8996..9313
DNA (318bp) protein (106aa)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hisE; phosphoribosyl-ATP pyrophosphatase (EC:3.6.1.31); K01523 phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
Phosphoribosyl-ATP pyrophosphatase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LKC5_9PROT
SCNpilot_cont_1000_p_scaffold_2993_curated_13
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9317..9799)
DNA (483bp) protein (161aa)
Dna-binding protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CWJ3_9RHIZ
Cro/Cl family transcriptional regulator {ECO:0000313|EMBL:KGF69290.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
XRE family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_2993_curated_14
bacterium YEK0313, Bacteria

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comp(9796..11373)
DNA (1578bp) protein (526aa)
lnt; apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-] rbh
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI0003799268
Apolipoprotein N-acyltransferase {ECO:0000313|EMBL:CEJ10356.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_1000_p_scaffold_2993_curated_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11370..12269)
DNA (900bp) protein (300aa)
CBS domain containing protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ85_PARL1
hypothetical protein
CBS domain containing protein {ECO:0000313|EMBL:ABS65218.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_2993_curated_16
unknown

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comp(12266..12370)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 16 items

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