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SCNpilot_cont_1000_p_scaffold_3375_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3375_curated_1
Hyphomonas beringensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..264)
DNA (264bp) protein (88aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1280946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas beringensis.;"
Endoribonuclease YbeY n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2ZDJ8_9CAUL
metalloprotein
SCNpilot_cont_1000_p_scaffold_3375_curated_2
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(276..1220)
DNA (945bp) protein (315aa)
phosphate starvation protein PhoH n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E0762B
Phosphate starvation-inducible protein PhoH {ECO:0000313|EMBL:GAN77724.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
phoH protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
SCNpilot_cont_1000_p_scaffold_3375_curated_3
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1217..2527)
DNA (1311bp) protein (437aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (stra
(dimethylallyl)adenosine tRNA methylthiotransferase n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI00037DBD28
MiaB family RNA modification enzyme; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
SCNpilot_cont_1000_p_scaffold_3375_curated_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2637..3419)
DNA (783bp) protein (261aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
Phospholipid/glycerol acyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ81_PARL1
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:ABS65214.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_3375_curated_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3435..3848)
DNA (414bp) protein (138aa)
Ferric uptake regulator, Fur family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ80_PARL1
ferric uptake regulator family protein; K03711 Fur family transcriptional regulator, ferric uptake regulator
Ferric uptake regulator, Fur family {ECO:0000313|EMBL:ABS65213.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_3375_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3897..4361)
DNA (465bp) protein (155aa)
putative ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QK07_BREDI
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EKY27912.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_cont_1000_p_scaffold_3375_curated_7
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4358..5029)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J5M7_9PROT
metal-dependent protease
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_1000_p_scaffold_3375_curated_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5029..5655)
DNA (627bp) protein (209aa)
Putative NADH dehydrogenase/NAD(P)H nitroreductase HYPDE_41503 {ECO:0000256|HAMAP-Rule:MF_01204}; EC=1.-.-.- {ECO:0000256|HAMAP-Rule:MF_01204};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Putative NADH dehydrogenase/NAD(P)H nitroreductase HYPDE_41503 n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BAD3_9RHIZ
malonic semialdehyde reductase
SCNpilot_cont_1000_p_scaffold_3375_curated_9
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5663..6226)
DNA (564bp) protein (188aa)
Scaffold protein Nfu/NifU n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ76_PARL1
Scaffold protein Nfu/NifU {ECO:0000313|EMBL:GAK43797.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
scaffold protein Nfu/NifU
SCNpilot_cont_1000_p_scaffold_3375_curated_10
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6362..6853
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VIT1_CAUST
hypothetical protein; K09965 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG09897.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_1000_p_scaffold_3375_curated_11
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6855..7052)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LKI4_DINSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV94767.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).;"
SCNpilot_cont_1000_p_scaffold_3375_curated_12
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7094..7963
DNA (870bp) protein (290aa)
heat shock protein HtpX; K03799 heat shock protein HtpX [EC:3.4.24.-]
Protease HtpX homolog {ECO:0000255|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000255|HAMAP-Rule:MF_00188};; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
Protease HtpX homolog n=2 Tax=Rhodospirillum rubrum RepID=HTPX_RHORT rbh
SCNpilot_cont_1000_p_scaffold_3375_curated_13
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8081..8932)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Sporothrix schenckii (strain ATCC 58251 / de Perez 2211183) RepID=U7PS25_SPOS1
Uncharacterized protein {ECO:0000313|EMBL:KGY45138.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
SCNpilot_cont_1000_p_scaffold_3375_curated_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9258..11402)
DNA (2145bp) protein (715aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW42_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS64125.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Displaying 14 items

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