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SCNpilot_cont_1000_p_scaffold_3085_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_3085_curated_1
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

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2..523
DNA (522bp) protein (174aa)
secretion protein HlyD n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB086
Membrane fusion component of tripartite multidrug resistance system {ECO:0000313|EMBL:EMD84206.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
secretion protein HlyD family protein; K03543 multidrug resistance protein A
SCNpilot_cont_1000_p_scaffold_3085_curated_2
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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520..2082
DNA (1563bp) protein (521aa)
Drug resistance MFS transporter, drug:H+ antiporter-1 family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVP2_9SPHN
DNA, contig: SP612 {ECO:0000313|EMBL:GAN12663.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
SCNpilot_cont_1000_p_scaffold_3085_curated_3
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2130..3689)
DNA (1560bp) protein (520aa)
Long-chain-fatty-acid--CoA ligase n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5A933_BURGB
Uncharacterized protein {ECO:0000313|EMBL:AKF86090.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
Long-chain-fatty-acid--CoA ligase
SCNpilot_cont_1000_p_scaffold_3085_curated_4
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3939..5165)
DNA (1227bp) protein (409aa)
N-acetyltransferase GCN5 n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YVZ7_9RHIZ
GCN5 family acetyltransferase {ECO:0000313|EMBL:ETR78099.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
N-acetyltransferase GCN5
SCNpilot_cont_1000_p_scaffold_3085_curated_5
unknown

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5498..6070
DNA (573bp) protein (191aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3085_curated_6
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6208..7458
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00035DA069
Putative major facilitator superfamily transporter {ECO:0000313|EMBL:GAD50247.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
major facilitator superfamily protein
SCNpilot_cont_1000_p_scaffold_3085_curated_7
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7455..8981
DNA (1527bp) protein (509aa)
Condensation domain protein n=1 Tax=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) RepID=Q0B313_BURCM
KY49.ctg7180000000020_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP16478.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
condensation domain-containing protein
SCNpilot_cont_1000_p_scaffold_3085_curated_8
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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8995..9636
DNA (642bp) protein (214aa)
4'-phosphopantetheinyl transferase n=1 Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9T6X9_MICAI
4'-phosphopantetheinyl transferase
4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:ADL46019.1}; TaxID=644283 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
SCNpilot_cont_1000_p_scaffold_3085_curated_9
Rhodobacteraceae bacterium HTCC2150, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9645..9908)
DNA (264bp) protein (88aa)
amino acid adenylation domain-containing protein n=1 Tax=Pseudoalteromonas flavipulchra RepID=UPI000299D612
Non-ribosomal peptide synthetase {ECO:0000313|EMBL:EBA05086.1}; TaxID=388401 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium HTCC2150.;"
polyketide synthase type I
SCNpilot_cont_1000_p_scaffold_3085_curated_10
unknown

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comp(10043..11374)
DNA (1332bp) protein (444aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3085_curated_11
unknown

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comp(11374..12027)
DNA (654bp) protein (218aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_3085_curated_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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12405..12650
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002D841AE
Dehydrogenase {ECO:0000313|EMBL:AHG93160.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_3085_curated_13
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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12655..13389
DNA (735bp) protein (245aa)
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein id=12554839 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACB76850.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_3085_curated_14
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

13386..14780
DNA (1395bp) protein (465aa)
ABC-2 type transporter id=12554840 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC-2 type transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_3085_curated_15
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14764..15093)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC402 RepID=V4NE39_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ETX01298.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Displaying 15 items

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