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SCNpilot_cont_1000_p_scaffold_2355_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2355_curated_1
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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1..1449
DNA (1449bp) protein (483aa)
Pyrrolo-quinoline quinone n=1 Tax=Luminiphilus syltensis NOR5-1B RepID=B8KQF5_9GAMM
pyrrolo-quinoline quinone
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
SCNpilot_cont_1000_p_scaffold_2355_curated_2
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1516..2490
DNA (975bp) protein (325aa)
Luciferase family oxidoreductase, group 1 n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3E4_VARPE
Putative enzyme {ECO:0000313|EMBL:CDX46332.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
luciferase family oxidoreductase, group 1
SCNpilot_cont_1000_p_scaffold_2355_curated_3
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2522..3226
DNA (705bp) protein (235aa)
Dimethylmenaquinone methyltransferase n=2 Tax=Rhodobacter sphaeroides RepID=A3PPC0_RHOS1
hypothetical protein
Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence {ECO:0000313|EMBL:ABA81045.1}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
SCNpilot_cont_1000_p_scaffold_2355_curated_4
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3566..4321)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RHW6_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:CDX45277.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2355_curated_5
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4381..5112)
DNA (732bp) protein (244aa)
Transcriptional regulator, GntR family n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T8Z0_CAUSK
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABZ72907.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_1000_p_scaffold_2355_curated_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5154..6173
DNA (1020bp) protein (340aa)
(R)-2-hydroxyacid dehydrogenase; K05884 (R)-2-hydroxyacid dehydrogenase [EC:1.1.1.272]
(R)-2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:ABD85685.1}; EC=1.1.1.272 {ECO:0000313|EMBL:ABD85685.1};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
(R)-2-hydroxyacid dehydrogenase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D51_RHOPB
SCNpilot_cont_1000_p_scaffold_2355_curated_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6380..7207
DNA (828bp) protein (276aa)
adh; alcohol dehydrogenase (EC:1.1.1.1)
Alcohol dehydrogenase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IX60_9SPHN
Alcohol dehydrogenase {ECO:0000313|EMBL:AJP72673.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_1000_p_scaffold_2355_curated_8
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7228..8709
DNA (1482bp) protein (494aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Aldehyde Dehydrogenase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAQ5_STAND
Aldehyde Dehydrogenase {ECO:0000313|EMBL:ADH90922.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_1000_p_scaffold_2355_curated_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(8716..10167)
DNA (1452bp) protein (484aa)
UPF0061 protein COCOR_00752 n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MHH3_CORCM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
SCNpilot_cont_1000_p_scaffold_2355_curated_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10219..11580)
DNA (1362bp) protein (454aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
DEAD/DEAH box helicase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW11_PARL1
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABS64094.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_2355_curated_11
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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11942..12499
DNA (558bp) protein (186aa)
Cold shock protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P5X7_AZOS1
cspA; cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold shock protein {ECO:0000313|EMBL:BAI76056.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_cont_1000_p_scaffold_2355_curated_12
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12518..14380)
DNA (1863bp) protein (621aa)
ABC transporter related n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS51_PARL1
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial
ABC transporter related {ECO:0000313|EMBL:ABS62734.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_1000_p_scaffold_2355_curated_13
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14558..15148
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RZB5_9RHOB
Conserved protein {ECO:0000313|EMBL:GAK45836.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein; K06966
SCNpilot_cont_1000_p_scaffold_2355_curated_14
Roseobacter sp. GAI101, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15145..15486
DNA (342bp) protein (114aa)
tRNA-binding protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036679D3
Chaperonin CsaA {ECO:0000313|EMBL:EEB86199.1}; TaxID=391589 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. GAI101.;"
Non-chaperonin molecular chaperone ATPase; K06878 tRNA-binding protein
SCNpilot_cont_1000_p_scaffold_2355_curated_15
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15492..17087)
DNA (1596bp) protein (532aa)
putative alpha-isopropylmalate/homocitrate synthase family transferase; K01649 2-isopropylmalate synthase [EC:2.3.3.13]
2-isopropylmalate synthase/homocitrate synthase family protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS43_PARL1
Putative alpha-isopropylmalate/homocitrate synthase family transferase {ECO:0000313|EMBL:GAK45839.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_1000_p_scaffold_2355_curated_16
unknown

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comp(17084..17611)
DNA (528bp) protein (176aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2355_curated_17
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17608..18939)
DNA (1332bp) protein (444aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
cysteinyl-tRNA synthetase n=1 Tax=Methylosinus sp. LW4 RepID=UPI000362596F
SCNpilot_cont_1000_p_scaffold_2355_curated_18
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19065..20390)
DNA (1326bp) protein (442aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17]
Glutamate--tRNA ligase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I836_RHOVT
SCNpilot_cont_1000_p_scaffold_2355_curated_19
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20532..21164)
DNA (633bp) protein (211aa)
nadE; NAD synthetase (EC:6.3.1.5); K01916 NAD+ synthase [EC:6.3.1.5]
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI000363377F
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
Displaying 19 items

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