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SCNpilot_cont_300_bf_scaffold_3429

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3429_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..879
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Pseudomonas veronii RepID=UPI00034C6E7E
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:CDN92159.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobac
UBA/THIF-type NAD/FAD-binding protein
SCNpilot_cont_300_bf_scaffold_3429_2
Paracoccus sp. 10990, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1428..2558)
DNA (1131bp) protein (377aa)
Recombinase n=1 Tax=Gluconobacter thailandicus NBRC 3257 RepID=T1E118_GLUTH
Resolvase {ECO:0000313|EMBL:KGJ19646.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 10990.;"
Resolvase domain
SCNpilot_cont_300_bf_scaffold_3429_3
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2522..2944)
DNA (423bp) protein (141aa)
Resolvase domain protein n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9YAN4_KETVW
Resolvase domain-containing protein
Resolvase domain protein {ECO:0000313|EMBL:AEM42436.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketoguloni
SCNpilot_cont_300_bf_scaffold_3429_4
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2972..3097)
DNA (126bp) protein (42aa)
Resolvase domain protein n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9YAN4_KETVW
Resolvase domain-containing protein
Resolvase {ECO:0000313|EMBL:KGJ03415.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
SCNpilot_cont_300_bf_scaffold_3429_5
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3110..3490)
DNA (381bp) protein (127aa)
XRE family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1S9_9RHIZ
DNA-binding protein {ECO:0000313|EMBL:KGJ03416.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;
transcriptional regulator helix turn helix domain
SCNpilot_cont_300_bf_scaffold_3429_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3480..3803)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EY56_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78514.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3429_7
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4266..4817
DNA (552bp) protein (184aa)
NmrA family transcriptional regulator n=1 Tax=Pseudomonas pyrrocinia RepID=UPI00035E8EF5
nmrA-like family protein
NmrA-like family protein {ECO:0000313|EMBL:AIO30326.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex
SCNpilot_cont_300_bf_scaffold_3429_8
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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4819..5298
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2LAA0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPC01646.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticarie
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3429_9
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5316..5588
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL26208.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_cont_300_bf_scaffold_3429_10
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5585..5857)
DNA (273bp) protein (91aa)
Conjugation TrbI family protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X3X5_OCHA4
bacterial conjugation TrbI-like family protein
Conjugation TrbI family protein {ECO:0000313|EMBL:ABS15929.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anth
SCNpilot_cont_300_bf_scaffold_3429_11
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5854..6606)
DNA (753bp) protein (251aa)
conjugal transfer protein TraI n=1 Tax=Hoeflea sp. 108 RepID=UPI0003749378
conjugation TrbI family protein
Conjugal transfer protein TraI {ECO:0000313|EMBL:KFL26564.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-
SCNpilot_cont_300_bf_scaffold_3429_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6759..7091
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037BD364
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU42468.1}; Flags: Precursor;; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas
SCNpilot_cont_300_bf_scaffold_3429_13
unknown

Not on your lists

comp(7037..7633)
DNA (597bp) protein (199aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3429_14
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7662..7997
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00036BC9FC
Uncharacterized protein {ECO:0000313|EMBL:EPR17217.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chi
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3429_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8002..8682
DNA (681bp) protein (227aa)
Lytic transglycosylase catalytic n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP25_RHOPX
lytic transglycosylase
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ADU42471.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodops
SCNpilot_cont_300_bf_scaffold_3429_16
Filifactor alocis, Filifactor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9818..10789
DNA (972bp) protein (324aa)
dihydrodipicolinate reductase n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI0003788783
dihydrodipicolinate reductase, N-terminus domain protein
Uncharacterized protein {ECO:0000313|EMBL:EFE29154.2}; TaxID=546269 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Filifactor.;" source="Filifactor alocis (strain ATC
SCNpilot_cont_300_bf_scaffold_3429_17
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10822..11976
DNA (1155bp) protein (385aa)
Acyl-CoA dehydrogenase type 2 domain containing protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PCV1_9BURK
Hydrolase {ECO:0000313|EMBL:EWM19315.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3429_18
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11992..12303
DNA (312bp) protein (104aa)
hpaC; 4-hydroxyphenylacetate 3-monooxygenase,reductase component (EC:1.5.1.-)
4-hydroxyphenylacetate 3-monooxygenase,reductase component {ECO:0000313|EMBL:CAJ48579.1}; EC=1.5.1.- {ECO:0000313|EMBL:CAJ48579.1};; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria;
4-hydroxyphenylacetate 3-monooxygenase,reductase component n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KVH8_BORA1
Displaying 18 items

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