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SCNpilot_cont_300_bf_scaffold_28

Search features with annotation key words

Displaying items 1-30 of 353 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_28_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(165..662)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NYD4_9BRAD
Membrane protein {ECO:0000313|EMBL:KIZ47415.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustri
hypothetical protein
SCNpilot_cont_300_bf_scaffold_28_2
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(665..1519)
DNA (855bp) protein (285aa)
Beta-propeller domains-containing protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QI29_9BRAD rbh
Beta-propeller domains-containing protein {ECO:0000313|EMBL:EGP09232.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiacea
hypothetical protein
SCNpilot_cont_300_bf_scaffold_28_3
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1548..2156)
DNA (609bp) protein (203aa)
LemA family protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037D2FE6
Lipoprotein {ECO:0000313|EMBL:EJZ29293.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001
lipoprotein
SCNpilot_cont_300_bf_scaffold_28_4
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2330..4657)
DNA (2328bp) protein (776aa)
carbon-monoxide dehydrogenase (EC:1.2.99.2)
Carbon-monoxide dehydrogenase large subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HA47_9BRAD rbh
Bradyrhizobium elkanii strain UASWS1015 Contig173, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49508.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
SCNpilot_cont_300_bf_scaffold_28_5
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4722..5606)
DNA (885bp) protein (295aa)
dihydrodipicolinate synthetase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000378BB4B rbh
dihydrodipicolinate synthase
Uncharacterized protein {ECO:0000313|EMBL:KGJ63641.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium dia
SCNpilot_cont_300_bf_scaffold_28_6
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5694..6548)
DNA (855bp) protein (285aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0R6_9RHIZ rbh
LysR family transcriptional regulator HdfR
LysR family transcriptional regulator HdfR {ECO:0000313|EMBL:BAQ16592.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanib
SCNpilot_cont_300_bf_scaffold_28_7
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6621..7787)
DNA (1167bp) protein (389aa)
cystathionine gamma-synthase (EC:2.5.1.48)
Cystathionine gamma-synthase {ECO:0000313|EMBL:BAQ16597.1}; EC=2.5.1.48 {ECO:0000313|EMBL:BAQ16597.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanib
Cystathionine gamma-synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQC6_NITHX
SCNpilot_cont_300_bf_scaffold_28_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7922..9652)
DNA (1731bp) protein (577aa)
Sulfite reductase [NADPH] hemoprotein beta-component {ECO:0000255|HAMAP-Rule:MF_01540}; Short=SiR-HP {ECO:0000255|HAMAP-Rule:MF_01540};; Short=SiRHP {ECO:0000255|HAMAP-Rule:MF_01540};; EC=1.8.1.2 {ECO
Sulfite reductase [NADPH] hemoprotein beta-component n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=CYSI_NITHX
sulfite reductase subunit beta
SCNpilot_cont_300_bf_scaffold_28_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9664..11514)
DNA (1851bp) protein (617aa)
Sulfite reductase [NADPH] flavoprotein alpha-component {ECO:0000256|PIRNR:PIRNR000207, ECO:0000256|SAAS:SAAS00014038}; Short=SiR-FP {ECO:0000256|PIRNR:PIRNR000207};; EC=1.8.1.2 {ECO:0000256|PIRNR:PIRN
Sulfite reductase [NADPH] flavoprotein alpha-component n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQC8_NITHX
sulfite reductase (NADPH) flavoprotein, alpha chain
SCNpilot_cont_300_bf_scaffold_28_10
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11920..12945)
DNA (1026bp) protein (342aa)
Acetylpolyamine aminohydrolase (Histone deacetylase family) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TP12_9BRAD rbh
Acetylpolyamine aminohydrolase {ECO:0000313|EMBL:KJC61571.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizo
histone deacetylase superfamily protein
SCNpilot_cont_300_bf_scaffold_28_11
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13207..14517
DNA (1311bp) protein (437aa)
Putative transporter protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GCK0_9BRAD rbh
Sugar phosphate permease {ECO:0000313|EMBL:KJC46848.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium s
putative transporter protein
SCNpilot_cont_300_bf_scaffold_28_12
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14704..15660
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00037539B7 rbh
Bradyrhizobium elkanii strain UASWS1015 Contig179, whole genome shotgun sequence {ECO:0000313|EMBL:KIU47762.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
beta-lactamase domain-containing protein
SCNpilot_cont_300_bf_scaffold_28_13
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15660..16235
DNA (576bp) protein (192aa)
Rhodanese n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EMG3_METSB
Bradyrhizobium elkanii strain UASWS1015 Contig179, whole genome shotgun sequence {ECO:0000313|EMBL:KIU47763.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
rhodanese
SCNpilot_cont_300_bf_scaffold_28_14
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16315..17103
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00035D08C6
Sulphur oxidation protein SoxZ {ECO:0000313|EMBL:CDX36481.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobiu
sulfur oxidation protein SoxZ
SCNpilot_cont_300_bf_scaffold_28_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17255..17950)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6S1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36449.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
putative high-affinity branched-chain amino acid transport ATP-binding protein LivF
SCNpilot_cont_300_bf_scaffold_28_16
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17950..18699)
DNA (750bp) protein (250aa)
ABC transporter related n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TI20_9BRAD rbh
ABC transporter related {ECO:0000313|EMBL:CCE06108.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
SCNpilot_cont_300_bf_scaffold_28_17
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18696..19997)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D9Y6_BRAJP rbh
ABC transporter permease {ECO:0000313|EMBL:KJC36365.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium s
ABC transporter permease
SCNpilot_cont_300_bf_scaffold_28_18
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19994..20941)
DNA (948bp) protein (316aa)
Inner-membrane translocator n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TI18_9BRAD rbh
Inner-membrane translocator {ECO:0000313|EMBL:CCE06106.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium
ABC transporter permease
SCNpilot_cont_300_bf_scaffold_28_19
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21081..22316)
DNA (1236bp) protein (412aa)
Extracellular ligand-binding receptor n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TI17_9BRAD rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:CCE06105.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Brad
branched-chain amino acid ABC transporter substrate-binding protein
SCNpilot_cont_300_bf_scaffold_28_20
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22651..23532)
DNA (882bp) protein (294aa)
Transcriptional regulator, AraC family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FF3_MESSB rbh
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABG63872.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Che
SCNpilot_cont_300_bf_scaffold_28_21
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23701..24234
DNA (534bp) protein (178aa)
2,4'-dihydroxyacetophenone dioxygenase n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWW5_POLGS rbh
2,4'-dihydroxyacetophenone dioxygenase
2,4'-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:ADZ71542.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 /
SCNpilot_cont_300_bf_scaffold_28_22
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24389..25147)
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FE8_MESSB rbh
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABG63877.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Ch
SCNpilot_cont_300_bf_scaffold_28_23
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25160..26611)
DNA (1452bp) protein (484aa)
Vanillin dehydrogenase {ECO:0000313|EMBL:ABG63878.1}; EC=1.2.1.67 {ECO:0000313|EMBL:ABG63878.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae;
Vanillin dehydrogenase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FE7_MESSB rbh
aldehyde dehydrogenase
SCNpilot_cont_300_bf_scaffold_28_24
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26627..27346)
DNA (720bp) protein (240aa)
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FE6_MESSB rbh
ABC transporter
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family {ECO:0000313|EMBL:ABG63879.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae;
SCNpilot_cont_300_bf_scaffold_28_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27339..28067)
DNA (729bp) protein (243aa)
High-affinity branched-chain amino acid transport ATP-binding protein BraF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWR2_9RHIZ rbh
ABC-type branched-chain amino acid transport system ATPase component {ECO:0000313|EMBL:EYR83619.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shi
ABC transporter
SCNpilot_cont_300_bf_scaffold_28_26
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28064..29011)
DNA (948bp) protein (316aa)
Branched-chain amino acid transport system permease protein LivM n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCC0_PELHB rbh
branched-chain amino acid transport system permease protein LivM
Branched-chain amino acid transport system permease protein LivM {ECO:0000313|EMBL:AEQ53714.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pe
SCNpilot_cont_300_bf_scaffold_28_27
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29008..29880)
DNA (873bp) protein (291aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FE3_MESSB rbh
inner-membrane translocator
Amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:ABG63882.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phy
SCNpilot_cont_300_bf_scaffold_28_28
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29902..31128)
DNA (1227bp) protein (409aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FE2_MESSB rbh
twin-arginine translocation pathway signal
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:ABG63883.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobial
SCNpilot_cont_300_bf_scaffold_28_29
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31384..32898)
DNA (1515bp) protein (505aa)
Methyltransferase n=1 Tax=Pseudomonas stutzeri NF13 RepID=M2UJI4_PSEST
Methyltransferase {ECO:0000313|EMBL:EMD98654.1}; TaxID=1212548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri NF
methyltransferase
SCNpilot_cont_300_bf_scaffold_28_30
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32921..33748)
DNA (828bp) protein (276aa)
phnC; phosphonate ABC transporter ATP-binding protein (EC:3.6.3.28)
ABC transporter, phosphonate transport protein PhnC {ECO:0000313|EMBL:AEI05393.1}; EC=3.6.3.28 {ECO:0000313|EMBL:AEI05393.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhiz
ABC transporter, phosphonate transport protein PhnC n=2 Tax=Oligotropha carboxidovorans RepID=B6JJH2_OLICO
Displaying items 1-30 of 353 in total

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