ggKbase home page

SCNpilot_cont_300_bf_scaffold_155

Search features with annotation key words

Displaying items 1-30 of 124 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_155_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(1..666)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS34_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57366.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedo
SCNpilot_cont_300_bf_scaffold_155_2
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(671..3475)
DNA (2805bp) protein (935aa)
Putative uncharacterized protein id=4587741 bin=GWF2_Bacteroidetes_35_48 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
hypothetical protein Tax=GWF2_Bacteroidetes_35_48_curated
carbohydrate binding family 6
SCNpilot_cont_300_bf_scaffold_155_3
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3668..4369
DNA (702bp) protein (234aa)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-
deoxyribonuclease V (EC:3.1.21.7)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003672DB7 rbh
SCNpilot_cont_300_bf_scaffold_155_4
GWA2_Bacteroidetes_30_7_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4484..5653
DNA (1170bp) protein (390aa)
deacylase n=1 Tax=Thermophagus xiamenensis RepID=UPI000255DCB9
lipid a 3-O-deacylase-related protein Tax=GWA2_Bacteroidetes_30_7_curated
SCNpilot_cont_300_bf_scaffold_155_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5660..7015
DNA (1356bp) protein (452aa)
RNA methyltransferase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6DD13 rbh
Fmu (Sun) domain-containing protein
Fmu (Sun) domain protein {ECO:0000313|EMBL:ACU63892.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pine
SCNpilot_cont_300_bf_scaffold_155_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7012..7584)
DNA (573bp) protein (191aa)
Heat shock protein DnaJ domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TH00_NIAKG
heat shock protein DnaJ domain-containing protein
Heat shock protein DnaJ domain protein {ECO:0000313|EMBL:AEW00611.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niaste
SCNpilot_cont_300_bf_scaffold_155_7
unknown

Not on your lists

7830..8087
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_155_8
Bacteroides cellulosilyticus CAG:158, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8164..8463)
DNA (300bp) protein (100aa)
Thioredoxin n=3 Tax=Bacteroides RepID=E2NLF0_9BACE
Thioredoxin {ECO:0000313|EMBL:CDB72915.1}; TaxID=1263038 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides cellulo
thioredoxin
SCNpilot_cont_300_bf_scaffold_155_9
Chryseobacterium jeonii, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8465..9058)
DNA (594bp) protein (198aa)
Thiopurine S-methyltransferase (TPMT) n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FRW0_9SPHI
SAM-dependent methlyltransferase {ECO:0000313|EMBL:KIA89308.1}; TaxID=266749 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseob
type 12 methyltransferase
SCNpilot_cont_300_bf_scaffold_155_10
Flavobacteriaceae bacterium 3519-10, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9058..10461)
DNA (1404bp) protein (468aa)
Metallo-beta-lactamase superfamily protein n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X6J1_FLAB3
metallo-beta-lactamase superfamily protein
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:ACU08029.1}; TaxID=531844 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae.;" source="Flavobacteriacea
SCNpilot_cont_300_bf_scaffold_155_11
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10624..11214)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQG2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAO41832.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacte
hypothetical protein
SCNpilot_cont_300_bf_scaffold_155_12
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11368..12267
DNA (900bp) protein (300aa)
Metallo-beta-lactamase protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FS91_9FLAO rbh
Metallo-beta-lactamase protein {ECO:0000313|EMBL:EIA08588.1}; TaxID=1086011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacter
beta-lactamase
SCNpilot_cont_300_bf_scaffold_155_13
Chryseobacterium jeonii, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12427..13830)
DNA (1404bp) protein (468aa)
Aspartate ammonia-lyase {ECO:0000256|RuleBase:RU362017}; Short=Aspartase {ECO:0000256|RuleBase:RU362017};; EC=4.3.1.1 {ECO:0000256|RuleBase:RU362017};; TaxID=266749 species="Bacteria; Bacteroidetes; F
Aspartate ammonia-lyase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W071_9FLAO
aspartate ammonia-lyase
SCNpilot_cont_300_bf_scaffold_155_14
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14015..15811
DNA (1797bp) protein (599aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP
Elongation factor 4 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PDZ4_CHIPD rbh
GTP-binding protein LepA
SCNpilot_cont_300_bf_scaffold_155_15

Not on your lists

16241..17248
DNA (1008bp) protein (336aa)
metH; methionine synthase, homocysteine-binding module (EC:2.1.1.13)
5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Flavobacteriaceae bacterium HQM9 RepID=UPI000248ED94
Uncharacterized protein {ECO:0000313|EMBL:KKN96589.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_cont_300_bf_scaffold_155_16
Elizabethkingia sp. BM10, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17256..19913
DNA (2658bp) protein (886aa)
Methionine synthase {ECO:0000313|EMBL:AJW64499.1}; EC=2.1.1.13 {ECO:0000313|EMBL:AJW64499.1};; TaxID=722877 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Eliza
metH_2; Methionine synthase (EC:2.1.1.13)
Methionine synthase n=2 Tax=Elizabethkingia anophelis RepID=H0KRW0_9FLAO
SCNpilot_cont_300_bf_scaffold_155_17
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20031..20987
DNA (957bp) protein (319aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Fla
Methylenetetrahydrofolate reductase n=1 Tax=Kordia algicida OT-1 RepID=A9DJE3_9FLAO rbh
5,10-methylenetetrahydrofolate reductase
SCNpilot_cont_300_bf_scaffold_155_18
Chryseobacterium sp. P1-3, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21115..21666
DNA (552bp) protein (184aa)
Heme oxygenase n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X272_FLAB3
Heme oxygenase
Heme oxygenase {ECO:0000313|EMBL:KFF75426.1}; TaxID=1517683 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. P1-3
SCNpilot_cont_300_bf_scaffold_155_19
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21747..23774)
DNA (2028bp) protein (676aa)
Endothelin-converting enzyme 1 {ECO:0000313|EMBL:ACT95533.1}; EC=3.4.24.71 {ECO:0000313|EMBL:ACT95533.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyado
endothelin-converting protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036D33FB rbh
endothelin-converting enzyme 1
SCNpilot_cont_300_bf_scaffold_155_20
unknown

Not on your lists

23940..24053
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_155_21
GWF2_Bacteroidetes_43_63_curated, Bacteroidetes, Bacteria

Not on your lists

24279..24767
DNA (489bp) protein (163aa)
Putative uncharacterized protein id=4345568 bin=GWF2_Bacteroidetes_43_63 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77
hypothetical protein Tax=GWF2_Bacteroidetes_43_63_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_155_22
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

24810..25190
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Imtechella halotolerans K1 RepID=I0WH25_9FLAO
hypothetical protein
Tax=BJP_IG2103_Bacteroidetes_41_9
SCNpilot_cont_300_bf_scaffold_155_23
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25305..25946
DNA (642bp) protein (214aa)
Metal-dependent protease {ECO:0000313|EMBL:GAO29388.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548
Universal bacterial protein YeaZ id=4535076 bin=GWF2_Bacteroidetes_35_48 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
peptidase M22 glycoprotease
SCNpilot_cont_300_bf_scaffold_155_24
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

25952..26482
DNA (531bp) protein (177aa)
Possible acyl-CoA thioester hydrolase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EJQ5_9SPHI
thioesterase superfamily protein Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
thioesterase
SCNpilot_cont_300_bf_scaffold_155_25

Not on your lists

26485..26991
DNA (507bp) protein (169aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
dfrA; Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=uncultured bacterium RepID=F8UVU7_9BACT
SCNpilot_cont_300_bf_scaffold_155_26
unknown

Not on your lists

27001..27531
DNA (531bp) protein (177aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_155_27
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(27523..28980)
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B56271
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII50574.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
SCNpilot_cont_300_bf_scaffold_155_28
unknown

Not on your lists

comp(28980..29933)
DNA (954bp) protein (318aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_155_29
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29982..31055)
DNA (1074bp) protein (358aa)
peptide chain release factor 1 n=1 Tax=Niabella aurantiaca RepID=UPI0003642013 rbh
peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Ch
SCNpilot_cont_300_bf_scaffold_155_30
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31286..33475)
DNA (2190bp) protein (730aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVM4_SOLCM
dipeptidyl aminopeptidase/acylaminoacyl peptidase
Tax=BJP_08E140C01_Bacteriodales_41_10
Displaying items 1-30 of 124 in total

View Taxonomy