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SCNpilot_cont_300_bf_scaffold_354

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_354_1
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..98)
DNA (96bp) protein (32aa)
Elongation factor Tu (Fragment) n=6 Tax=Achromobacter RepID=J4Y5J4_9BURK
Translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacter
SCNpilot_cont_300_bf_scaffold_354_2
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(154..2256)
DNA (2103bp) protein (701aa)
fusA; elongation factor EF-G FusA (EC:3.6.5.3); K02355 elongation factor G Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
Elongation factor G n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XWG0_ALCXX rbh
Translation elongation factor G
SCNpilot_cont_300_bf_scaffold_354_3
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2335..2805)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXL1_PUSST
SSU ribosomal protein S7p
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniel
SCNpilot_cont_300_bf_scaffold_354_4
Basilea psittacipulmonis, Basilea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2958..3335)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=1 Tax=Advenella kashmirensis W13003 RepID=V8QUD3_9BURK
30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1072685 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Basile
SCNpilot_cont_300_bf_scaffold_354_5
Cyanobium sp. CACIAM 14, Cyanobium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(3755..4981)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000305DA8C rbh
NADH dehydrogenase {ECO:0000313|EMBL:KEF43333.1}; TaxID=1496688 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobium.;" source="Cyanobium sp. CACIAM 14.;"
NADH dehydrogenase, FAD-containing subunit
SCNpilot_cont_300_bf_scaffold_354_6
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5020..5760)
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002E2E3A2 rbh
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KHQ99271.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea
SCNpilot_cont_300_bf_scaffold_354_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5753..6502)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D41DFB rbh
ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
branched-chain amino acid ABC transporter substrate-binding protein
SCNpilot_cont_300_bf_scaffold_354_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6495..7532)
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002DE357C rbh
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1 Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
ABC transporter permease
SCNpilot_cont_300_bf_scaffold_354_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7529..8491)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031B03A8 rbh
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
ABC transporter permease
SCNpilot_cont_300_bf_scaffold_354_10
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8460..9647)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003118045 rbh
periplasmic binding domain protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGH10165.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamona
SCNpilot_cont_300_bf_scaffold_354_11
Streptomyces rimosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9831..10301
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000369BDF0
BadM/Rrf2 family transcriptional regulator {ECO:0000313|EMBL:ELQ79298.1}; TaxID=1265868 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rim
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_354_12
Pigmentiphaga sp. DL-8, Pigmentiphaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10461..11924
DNA (1464bp) protein (488aa)
Catalase {ECO:0000256|RuleBase:RU000498}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; TaxID=1481731 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pigmentiph
katA; catalase (EC:1.11.1.6)
Catalase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QMU1_9BURK
SCNpilot_cont_300_bf_scaffold_354_13
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12176..13162
DNA (987bp) protein (329aa)
Uncharacterized protein n=34 Tax=Bordetella RepID=F4LCZ0_BORPC rbh
Tripartite tricarboxylate transporter family receptor {ECO:0000313|EMBL:KCV62077.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;"
tctC; Tripartite tricarboxylate transporter family receptor
SCNpilot_cont_300_bf_scaffold_354_14
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13193..14185
DNA (993bp) protein (331aa)
4,5-dihydroxyphthalate decarboxylase n=3 Tax=Bordetella bronchiseptica RepID=K0MLN7_BORBM rbh
4,5-dihydroxyphthalate decarboxylase
NMT1/THI5 domain protein {ECO:0000313|EMBL:KDD59638.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchise
SCNpilot_cont_300_bf_scaffold_354_15
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14193..15056
DNA (864bp) protein (288aa)
Molybdopterin dehydrogenase n=3 Tax=Bordetella bronchiseptica RepID=K0MMW3_BORBM rbh
molybdopterin dehydrogenase
FAD binding domain in molybdopterin dehydrogenase {ECO:0000313|EMBL:KDD59617.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" sou
SCNpilot_cont_300_bf_scaffold_354_16
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15065..15571
DNA (507bp) protein (169aa)
Probable 2Fe-2S ferredoxin n=2 Tax=Bordetella bronchiseptica RepID=K0MR37_BORBM
2Fe-2S ferredoxin
2Fe-2S iron-sulfur cluster-binding domain protein {ECO:0000313|EMBL:KDD59633.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" sou
SCNpilot_cont_300_bf_scaffold_354_17
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15561..17936
DNA (2376bp) protein (792aa)
Probable dehydrogenase/oxidase n=1 Tax=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) RepID=Q7WQE1_BORBR rbh
dehydrogenase/oxidase
Probable dehydrogenase/oxidase {ECO:0000313|EMBL:CCN21180.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bro
SCNpilot_cont_300_bf_scaffold_354_18
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17954..18742
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Bordetella bronchiseptica (strain MO149) RepID=K0MCP2_BORBM rbh
Carbon monoxide dehydrogenase subunit G CoxG {ECO:0000313|EMBL:KDD59631.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="
hypothetical protein
SCNpilot_cont_300_bf_scaffold_354_19
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18807..19115
DNA (309bp) protein (103aa)
Ferredoxin n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S0Z3_9BURK
Ferredoxin {ECO:0000313|EMBL:EHP43809.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
ferredoxin
SCNpilot_cont_300_bf_scaffold_354_20
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19099..20376
DNA (1278bp) protein (426aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XD82_9RALS rbh
Ferredoxin reductase
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG22750.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholder
SCNpilot_cont_300_bf_scaffold_354_21
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20399..21691
DNA (1293bp) protein (431aa)
Rieske [2Fe-2S] domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XBG0_9BURK rbh
Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG22749.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholder
SCNpilot_cont_300_bf_scaffold_354_22
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21688..22209
DNA (522bp) protein (174aa)
Aromatic-ring-hydroxylating dioxygenase, beta subunit n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UQ1_CUPPJ
Dioxygenase {ECO:0000313|EMBL:KJK18151.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
aromatic-ring-hydroxylating dioxygenase subunit beta
SCNpilot_cont_300_bf_scaffold_354_23
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22221..23183
DNA (963bp) protein (321aa)
Amidohydrolase 2 n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UP1_CUPPJ rbh
amidohydrolase
Amidohydrolase 2 {ECO:0000313|EMBL:AAZ63143.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis
SCNpilot_cont_300_bf_scaffold_354_24
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23275..24102
DNA (828bp) protein (276aa)
Alpha/beta hydrolase fold family protein 7 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HM84_ACHXA rbh
alpha/beta hydrolase
Alpha/beta hydrolase {ECO:0000313|EMBL:AJC16706.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
SCNpilot_cont_300_bf_scaffold_354_25
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24137..25168
DNA (1032bp) protein (344aa)
Uncharacterized protein n=3 Tax=Bordetella RepID=Q7TT89_BORPA rbh
2,5-dihydroxypyridine 5,6-dioxygenase {ECO:0000313|EMBL:KJK10759.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae
hypothetical protein
SCNpilot_cont_300_bf_scaffold_354_26
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25182..25814
DNA (633bp) protein (211aa)
Isochorismatase hydrolase n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UN7_CUPPJ rbh
N-carbamoylsarcosine amidase {ECO:0000313|EMBL:KDP86420.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus s
isochorismatase hydrolase
SCNpilot_cont_300_bf_scaffold_354_27
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25905..26414
DNA (510bp) protein (170aa)
MarR-family transcriptional regulator n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KW54_BORA1
MarR family transcriptional regulator
MarR-family transcriptional regulator {ECO:0000313|EMBL:CAJ50357.1}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetel
SCNpilot_cont_300_bf_scaffold_354_28
bacterium YEK0313, Bacteria

Not on your lists

comp(26387..27634)
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00036C5387 rbh
HTH-type transcriptional regulator GbpR {ECO:0000313|EMBL:CEJ14033.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
transcription factor transcription regulator protein
SCNpilot_cont_300_bf_scaffold_354_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27634..28299)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D8E209
isochorismatase hydrolase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
isochorismatase
SCNpilot_cont_300_bf_scaffold_354_30
Bordetella sp. 10d, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28312..28845)
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00036E1C97
4-amino-3-hydroxybenzoate 2,3-dioxygenase {ECO:0000313|EMBL:BAD08206.1}; TaxID=170622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bord
3-hydroxybutyryl-CoA dehydratase
Displaying items 1-30 of 58 in total

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